miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25762 5' -53.1 NC_005337.1 + 43822 0.66 0.969254
Target:  5'- aGGUGGagaaGAUCAUgGCC-UCCg-CGCa -3'
miRNA:   3'- aCCACUa---CUAGUAgCGGuAGGagGCG- -5'
25762 5' -53.1 NC_005337.1 + 130423 0.66 0.969254
Target:  5'- cGGUGccaGAcCAUCGaCAUCCUCCu- -3'
miRNA:   3'- aCCACua-CUaGUAGCgGUAGGAGGcg -5'
25762 5' -53.1 NC_005337.1 + 29861 0.66 0.969254
Target:  5'- aUGG-GgcGGUUggaGCCGUCCUCgGCg -3'
miRNA:   3'- -ACCaCuaCUAGuagCGGUAGGAGgCG- -5'
25762 5' -53.1 NC_005337.1 + 67079 0.66 0.966087
Target:  5'- gUGGUGAUGAgcaccuugCAgcccggCGCCGUgagCUCgCGCa -3'
miRNA:   3'- -ACCACUACUa-------GUa-----GCGGUAg--GAG-GCG- -5'
25762 5' -53.1 NC_005337.1 + 89907 0.66 0.966087
Target:  5'- cGGUGGgcggcgGggCGUCGCCccacUCCUcacagagggCCGCg -3'
miRNA:   3'- aCCACUa-----CuaGUAGCGGu---AGGA---------GGCG- -5'
25762 5' -53.1 NC_005337.1 + 40132 0.66 0.966087
Target:  5'- -cGUGGUGGUCAUCuCCAUCgUgUGUu -3'
miRNA:   3'- acCACUACUAGUAGcGGUAGgAgGCG- -5'
25762 5' -53.1 NC_005337.1 + 57312 0.66 0.962696
Target:  5'- cGGaGAUaGUC-UCGCUcaCCUCCGCg -3'
miRNA:   3'- aCCaCUAcUAGuAGCGGuaGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 18643 0.66 0.962696
Target:  5'- gGGUGGUGuGUgAUCGCCAgg-UCgGCg -3'
miRNA:   3'- aCCACUAC-UAgUAGCGGUaggAGgCG- -5'
25762 5' -53.1 NC_005337.1 + 65925 0.66 0.962696
Target:  5'- ------cGAUCGcgaccgCGCCGUCCUCCGg -3'
miRNA:   3'- accacuaCUAGUa-----GCGGUAGGAGGCg -5'
25762 5' -53.1 NC_005337.1 + 51858 0.66 0.959077
Target:  5'- aGGagcaGAUGcuggccuccAUCuUCGCCAucgccUCCUCCGCc -3'
miRNA:   3'- aCCa---CUAC---------UAGuAGCGGU-----AGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 115110 0.66 0.959077
Target:  5'- gGGUccAUGAUCGUgGCCGagaUCUCCGUg -3'
miRNA:   3'- aCCAc-UACUAGUAgCGGUa--GGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 81041 0.66 0.956404
Target:  5'- cUGGUGccuguccAUGAUC-UCGCggagcucgcggaugaCGUCCUCCGa -3'
miRNA:   3'- -ACCAC-------UACUAGuAGCG---------------GUAGGAGGCg -5'
25762 5' -53.1 NC_005337.1 + 23877 0.66 0.955223
Target:  5'- aUGGccacGGUguUCGCCugccUCCUCCGCc -3'
miRNA:   3'- -ACCacuaCUAguAGCGGu---AGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 122480 0.66 0.955223
Target:  5'- aGGUGgcGGUCAUggCGaCCGUCCgUCUGg -3'
miRNA:   3'- aCCACuaCUAGUA--GC-GGUAGG-AGGCg -5'
25762 5' -53.1 NC_005337.1 + 48367 0.66 0.955223
Target:  5'- cGGUGGUGGacgagaacgUCAgccgCGCC-UUCgagCCGCg -3'
miRNA:   3'- aCCACUACU---------AGUa---GCGGuAGGa--GGCG- -5'
25762 5' -53.1 NC_005337.1 + 52944 0.66 0.955223
Target:  5'- aGGaGAUGcuccagcccuUCGcgcCGCCGUUCUCCGCg -3'
miRNA:   3'- aCCaCUACu---------AGUa--GCGGUAGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 131554 0.66 0.955223
Target:  5'- cGGcGGacGUCGUCGCgCucgugcUCCUCCGCg -3'
miRNA:   3'- aCCaCUacUAGUAGCG-Gu-----AGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 96619 0.67 0.951131
Target:  5'- aGGUGGUGccCAUCGCgGUgaagcCCgaCCGCg -3'
miRNA:   3'- aCCACUACuaGUAGCGgUA-----GGa-GGCG- -5'
25762 5' -53.1 NC_005337.1 + 19843 0.67 0.951131
Target:  5'- ---cGAUGAgccggaCGUCGUCCUCCGUg -3'
miRNA:   3'- accaCUACUagua--GCGGUAGGAGGCG- -5'
25762 5' -53.1 NC_005337.1 + 30392 0.67 0.946796
Target:  5'- aGGUGAggauGUCGagGCCGccgCgCUCCGCg -3'
miRNA:   3'- aCCACUac--UAGUagCGGUa--G-GAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.