Results 1 - 20 of 429 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25783 | 3' | -55.2 | NC_005337.1 | + | 38448 | 0.66 | 0.928963 |
Target: 5'- aUCACGCccgagGCGUACGCcuucAUGCGGUgcGCg -3' miRNA: 3'- gGGUGCG-----CGCGUGCG----UGUGCCAaaUG- -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 14421 | 0.66 | 0.923579 |
Target: 5'- gCCGCGCGacgugccgcCGCugGCGC-CGGg---- -3' miRNA: 3'- gGGUGCGC---------GCGugCGUGuGCCaaaug -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 82625 | 0.66 | 0.923579 |
Target: 5'- aCgGCGgGCGCugGCGacCGCGGa---- -3' miRNA: 3'- gGgUGCgCGCGugCGU--GUGCCaaaug -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 93741 | 0.66 | 0.917952 |
Target: 5'- aCCAcCGCGCGC-CGCG-GCGGc-UGCa -3' miRNA: 3'- gGGU-GCGCGCGuGCGUgUGCCaaAUG- -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 46273 | 0.66 | 0.917952 |
Target: 5'- aCCAUGCGCGUGCaGCAgcuCAaGGggUACc -3' miRNA: 3'- gGGUGCGCGCGUG-CGU---GUgCCaaAUG- -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 38973 | 0.66 | 0.917952 |
Target: 5'- gCCCGagUGCGCGUGCGuCAC-CGGccggGCg -3' miRNA: 3'- -GGGU--GCGCGCGUGC-GUGuGCCaaa-UG- -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 18946 | 0.66 | 0.917952 |
Target: 5'- gCCCGcCGC-CGgGCGUccgaGCACGGUgUACc -3' miRNA: 3'- -GGGU-GCGcGCgUGCG----UGUGCCAaAUG- -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 5490 | 0.66 | 0.917952 |
Target: 5'- gCCCAugauCGCGCGCAccCGUGCuaccaGGUUcGCg -3' miRNA: 3'- -GGGU----GCGCGCGU--GCGUGug---CCAAaUG- -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 104620 | 0.66 | 0.917952 |
Target: 5'- aCCGCGgGaGCACGCGCAucuCGGa---- -3' miRNA: 3'- gGGUGCgCgCGUGCGUGU---GCCaaaug -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 104455 | 0.66 | 0.923579 |
Target: 5'- -gCACGCGCaGCACacacaGUACGCGGa---- -3' miRNA: 3'- ggGUGCGCG-CGUG-----CGUGUGCCaaaug -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 114597 | 0.66 | 0.923579 |
Target: 5'- gCCACGCGgcCGCugGaCAUAgGGUUc-- -3' miRNA: 3'- gGGUGCGC--GCGugC-GUGUgCCAAaug -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 60105 | 0.66 | 0.923579 |
Target: 5'- gCCCGaGCGCGCcuccCGCAgCACGGc---- -3' miRNA: 3'- -GGGUgCGCGCGu---GCGU-GUGCCaaaug -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 118233 | 0.66 | 0.928963 |
Target: 5'- gCCCGCGCgGCgGCAgGCGCcgcaGCGcGUgUACc -3' miRNA: 3'- -GGGUGCG-CG-CGUgCGUG----UGC-CAaAUG- -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 2916 | 0.66 | 0.928963 |
Target: 5'- aCCGCGCGCGCuucuCGUGCuCGaaaaagUGCa -3' miRNA: 3'- gGGUGCGCGCGu---GCGUGuGCcaa---AUG- -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 116210 | 0.66 | 0.928963 |
Target: 5'- gCCAgCGCGUGUGCGC-C-CaGUUUGCg -3' miRNA: 3'- gGGU-GCGCGCGUGCGuGuGcCAAAUG- -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 133564 | 0.66 | 0.923579 |
Target: 5'- cCCCGCGgcCGCGgGCGUGCGCGcGa---- -3' miRNA: 3'- -GGGUGC--GCGCgUGCGUGUGC-Caaaug -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 123837 | 0.66 | 0.923579 |
Target: 5'- aCgACGCGCGCAcCGC-CGCGcag-GCg -3' miRNA: 3'- gGgUGCGCGCGU-GCGuGUGCcaaaUG- -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 89769 | 0.66 | 0.923579 |
Target: 5'- gCCGCGaGCGCGaguUGCGCGuCGGUgacGCg -3' miRNA: 3'- gGGUGCgCGCGU---GCGUGU-GCCAaa-UG- -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 83879 | 0.66 | 0.923579 |
Target: 5'- aCCgACGCGCgGCGCGCcccCGCGccagGCg -3' miRNA: 3'- -GGgUGCGCG-CGUGCGu--GUGCcaaaUG- -5' |
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25783 | 3' | -55.2 | NC_005337.1 | + | 82121 | 0.66 | 0.923579 |
Target: 5'- gCCGCGCugGCGCAUgaGCGCGCGa----- -3' miRNA: 3'- gGGUGCG--CGCGUG--CGUGUGCcaaaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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