miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25783 3' -55.2 NC_005337.1 + 562 0.71 0.660054
Target:  5'- aCCGgcCGCGCGUACGC-CGCGGcc-GCg -3'
miRNA:   3'- gGGU--GCGCGCGUGCGuGUGCCaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 562 0.71 0.660054
Target:  5'- aCCGgcCGCGCGUACGC-CGCGGcc-GCg -3'
miRNA:   3'- gGGU--GCGCGCGUGCGuGUGCCaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 708 0.73 0.58804
Target:  5'- gCU-CGCGCGCACGCccgcggcCGCGGggUACg -3'
miRNA:   3'- gGGuGCGCGCGUGCGu------GUGCCaaAUG- -5'
25783 3' -55.2 NC_005337.1 + 708 0.73 0.58804
Target:  5'- gCU-CGCGCGCACGCccgcggcCGCGGggUACg -3'
miRNA:   3'- gGGuGCGCGCGUGCGu------GUGCCaaAUG- -5'
25783 3' -55.2 NC_005337.1 + 825 0.71 0.700881
Target:  5'- gUCCGCGCGCGCGgGC-C-CGGgcucgACg -3'
miRNA:   3'- -GGGUGCGCGCGUgCGuGuGCCaaa--UG- -5'
25783 3' -55.2 NC_005337.1 + 825 0.71 0.700881
Target:  5'- gUCCGCGCGCGCGgGC-C-CGGgcucgACg -3'
miRNA:   3'- -GGGUGCGCGCGUgCGuGuGCCaaa--UG- -5'
25783 3' -55.2 NC_005337.1 + 1134 0.66 0.905975
Target:  5'- -gCACGCGCGCGaccaGCucCGCGGg---- -3'
miRNA:   3'- ggGUGCGCGCGUg---CGu-GUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 1134 0.68 0.848853
Target:  5'- -gCACGCGCGCGaccaGCucCGCGGggaGCg -3'
miRNA:   3'- ggGUGCGCGCGUg---CGu-GUGCCaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 1177 0.67 0.864448
Target:  5'- gCCCGCuaggcgGUGCGCgaGCGCGgCACGGgc-GCg -3'
miRNA:   3'- -GGGUG------CGCGCG--UGCGU-GUGCCaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 1210 0.69 0.80651
Target:  5'- gCCACcgGCGC-CGCGUACGCGGa---- -3'
miRNA:   3'- gGGUG--CGCGcGUGCGUGUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 1408 0.68 0.832462
Target:  5'- gUCCGCGUGUGCGUGUuuguCugGGUcUGCg -3'
miRNA:   3'- -GGGUGCGCGCGUGCGu---GugCCAaAUG- -5'
25783 3' -55.2 NC_005337.1 + 1463 0.66 0.915634
Target:  5'- aCCACGUaCGcCACGCACugccucguggucuCGGUggGCa -3'
miRNA:   3'- gGGUGCGcGC-GUGCGUGu------------GCCAaaUG- -5'
25783 3' -55.2 NC_005337.1 + 1692 0.67 0.898982
Target:  5'- gCCGCaGCGCGCGuCGCaacagcgACACGGccaccgUGCc -3'
miRNA:   3'- gGGUG-CGCGCGU-GCG-------UGUGCCaa----AUG- -5'
25783 3' -55.2 NC_005337.1 + 2066 0.72 0.639468
Target:  5'- cCCCGugcCGCaGCaGCAgGCGCACGGUgucgGCg -3'
miRNA:   3'- -GGGU---GCG-CG-CGUgCGUGUGCCAaa--UG- -5'
25783 3' -55.2 NC_005337.1 + 2169 0.74 0.498016
Target:  5'- gCCGCGCacgGCGCcgACGCGCACGGcgcagGCg -3'
miRNA:   3'- gGGUGCG---CGCG--UGCGUGUGCCaaa--UG- -5'
25783 3' -55.2 NC_005337.1 + 2270 0.66 0.905975
Target:  5'- aCCC-CGUGUccGCcCGCACugGGUcagGCu -3'
miRNA:   3'- -GGGuGCGCG--CGuGCGUGugCCAaa-UG- -5'
25783 3' -55.2 NC_005337.1 + 2385 0.66 0.905975
Target:  5'- gUCCACGUGCGCGCcCGCcuccaggaggcaGCGGa---- -3'
miRNA:   3'- -GGGUGCGCGCGUGcGUG------------UGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 2594 0.69 0.797528
Target:  5'- gCCACGCGCGCGaagucgaaguCGUucaGCGCGGcgcGCa -3'
miRNA:   3'- gGGUGCGCGCGU----------GCG---UGUGCCaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 2916 0.66 0.928963
Target:  5'- aCCGCGCGCGCuucuCGUGCuCGaaaaagUGCa -3'
miRNA:   3'- gGGUGCGCGCGu---GCGUGuGCcaa---AUG- -5'
25783 3' -55.2 NC_005337.1 + 2939 0.71 0.700881
Target:  5'- gCCgACGCGCacgGCGCGCaugaGCGCGGUc--- -3'
miRNA:   3'- -GGgUGCGCG---CGUGCG----UGUGCCAaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.