miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25783 3' -55.2 NC_005337.1 + 24814 1.12 0.002028
Target:  5'- gCCCACGCGCGCACGCACACGGUUUACg -3'
miRNA:   3'- -GGGUGCGCGCGUGCGUGUGCCAAAUG- -5'
25783 3' -55.2 NC_005337.1 + 50760 0.75 0.441529
Target:  5'- aUCGCGgGCGCACGCGUGCGGUUcccGCg -3'
miRNA:   3'- gGGUGCgCGCGUGCGUGUGCCAAa--UG- -5'
25783 3' -55.2 NC_005337.1 + 28494 0.75 0.459967
Target:  5'- gCCGCGCgGCGCGCGguCGCGCGGcacUGCg -3'
miRNA:   3'- gGGUGCG-CGCGUGC--GUGUGCCaa-AUG- -5'
25783 3' -55.2 NC_005337.1 + 38448 0.66 0.928963
Target:  5'- aUCACGCccgagGCGUACGCcuucAUGCGGUgcGCg -3'
miRNA:   3'- gGGUGCG-----CGCGUGCG----UGUGCCAaaUG- -5'
25783 3' -55.2 NC_005337.1 + 97061 0.79 0.269868
Target:  5'- gCCACGCaCGCGCgGCGCGCGGUggucUGCg -3'
miRNA:   3'- gGGUGCGcGCGUG-CGUGUGCCAa---AUG- -5'
25783 3' -55.2 NC_005337.1 + 80202 0.79 0.295906
Target:  5'- gCUCGCGCgucucguugaugaGCGCGCGCACGCGGUc--- -3'
miRNA:   3'- -GGGUGCG-------------CGCGUGCGUGUGCCAaaug -5'
25783 3' -55.2 NC_005337.1 + 109168 0.79 0.296598
Target:  5'- gUCCGCGCGCGcCGCGCcGCGCGGg---- -3'
miRNA:   3'- -GGGUGCGCGC-GUGCG-UGUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 29717 0.78 0.303595
Target:  5'- gCgAgGCGCGCACGCGCGCGcGgugUUGCg -3'
miRNA:   3'- gGgUgCGCGCGUGCGUGUGC-Ca--AAUG- -5'
25783 3' -55.2 NC_005337.1 + 126025 0.77 0.348224
Target:  5'- cCCCGCGCGUGCgugugucucauGCGCGC-CGGUgcggACg -3'
miRNA:   3'- -GGGUGCGCGCG-----------UGCGUGuGCCAaa--UG- -5'
25783 3' -55.2 NC_005337.1 + 48292 0.75 0.441529
Target:  5'- aCCCGCGguCGCGCcucCGCAUGCGGUgcGCg -3'
miRNA:   3'- -GGGUGC--GCGCGu--GCGUGUGCCAaaUG- -5'
25783 3' -55.2 NC_005337.1 + 100272 0.76 0.432468
Target:  5'- aCCUAC-CGCGCGCGCAagagGCGGUccgUGCg -3'
miRNA:   3'- -GGGUGcGCGCGUGCGUg---UGCCAa--AUG- -5'
25783 3' -55.2 NC_005337.1 + 88332 0.78 0.303595
Target:  5'- gCCACGCGCGCcgGCGCGCGCGa----- -3'
miRNA:   3'- gGGUGCGCGCG--UGCGUGUGCcaaaug -5'
25783 3' -55.2 NC_005337.1 + 31034 0.83 0.173005
Target:  5'- aCCGCGCGgGCGCGCACcaGCGGcaggUUGCa -3'
miRNA:   3'- gGGUGCGCgCGUGCGUG--UGCCa---AAUG- -5'
25783 3' -55.2 NC_005337.1 + 6892 0.75 0.441529
Target:  5'- gUCCAUGuCGCGCGCGCGCG-GGUccGCg -3'
miRNA:   3'- -GGGUGC-GCGCGUGCGUGUgCCAaaUG- -5'
25783 3' -55.2 NC_005337.1 + 52023 0.8 0.239225
Target:  5'- gCCGCGCGCGCGCGguCAUGGa---- -3'
miRNA:   3'- gGGUGCGCGCGUGCguGUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 80686 0.78 0.303595
Target:  5'- uUCCGCGCGCGCAUGUGCGCGa----- -3'
miRNA:   3'- -GGGUGCGCGCGUGCGUGUGCcaaaug -5'
25783 3' -55.2 NC_005337.1 + 69913 0.75 0.441529
Target:  5'- uCCUGCGCGCGCugG-ACACGGcugugUACc -3'
miRNA:   3'- -GGGUGCGCGCGugCgUGUGCCaa---AUG- -5'
25783 3' -55.2 NC_005337.1 + 110361 0.75 0.450696
Target:  5'- gCCGCGgGCGCGCggGCGCGCGGcagcgACa -3'
miRNA:   3'- gGGUGCgCGCGUG--CGUGUGCCaaa--UG- -5'
25783 3' -55.2 NC_005337.1 + 54010 0.8 0.263496
Target:  5'- aCCGCGuCGCGCACGCGCACGu----- -3'
miRNA:   3'- gGGUGC-GCGCGUGCGUGUGCcaaaug -5'
25783 3' -55.2 NC_005337.1 + 128696 0.79 0.296598
Target:  5'- -gCACGCGCGCugGCgACGCGGcugGCg -3'
miRNA:   3'- ggGUGCGCGCGugCG-UGUGCCaaaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.