miRNA display CGI


Results 1 - 20 of 429 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25783 3' -55.2 NC_005337.1 + 24814 1.12 0.002028
Target:  5'- gCCCACGCGCGCACGCACACGGUUUACg -3'
miRNA:   3'- -GGGUGCGCGCGUGCGUGUGCCAAAUG- -5'
25783 3' -55.2 NC_005337.1 + 31034 0.83 0.173005
Target:  5'- aCCGCGCGgGCGCGCACcaGCGGcaggUUGCa -3'
miRNA:   3'- gGGUGCGCgCGUGCGUG--UGCCa---AAUG- -5'
25783 3' -55.2 NC_005337.1 + 127385 0.82 0.177457
Target:  5'- aCCCGCGCGCGCGCG-ACAUGGacggGCg -3'
miRNA:   3'- -GGGUGCGCGCGUGCgUGUGCCaaa-UG- -5'
25783 3' -55.2 NC_005337.1 + 25105 0.82 0.201267
Target:  5'- gCCCGCGCgGCGCgGCGCGCGCGGa---- -3'
miRNA:   3'- -GGGUGCG-CGCG-UGCGUGUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 52023 0.8 0.239225
Target:  5'- gCCGCGCGCGCGCGguCAUGGa---- -3'
miRNA:   3'- gGGUGCGCGCGUGCguGUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 54010 0.8 0.263496
Target:  5'- aCCGCGuCGCGCACGCGCACGu----- -3'
miRNA:   3'- gGGUGC-GCGCGUGCGUGUGCcaaaug -5'
25783 3' -55.2 NC_005337.1 + 97061 0.79 0.269868
Target:  5'- gCCACGCaCGCGCgGCGCGCGGUggucUGCg -3'
miRNA:   3'- gGGUGCGcGCGUG-CGUGUGCCAa---AUG- -5'
25783 3' -55.2 NC_005337.1 + 130163 0.79 0.269868
Target:  5'- gUCCGCGCGUcucCGCGCGCGCGGUgaggACg -3'
miRNA:   3'- -GGGUGCGCGc--GUGCGUGUGCCAaa--UG- -5'
25783 3' -55.2 NC_005337.1 + 80202 0.79 0.295906
Target:  5'- gCUCGCGCgucucguugaugaGCGCGCGCACGCGGUc--- -3'
miRNA:   3'- -GGGUGCG-------------CGCGUGCGUGUGCCAaaug -5'
25783 3' -55.2 NC_005337.1 + 128696 0.79 0.296598
Target:  5'- -gCACGCGCGCugGCgACGCGGcugGCg -3'
miRNA:   3'- ggGUGCGCGCGugCG-UGUGCCaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 109168 0.79 0.296598
Target:  5'- gUCCGCGCGCGcCGCGCcGCGCGGg---- -3'
miRNA:   3'- -GGGUGCGCGC-GUGCG-UGUGCCaaaug -5'
25783 3' -55.2 NC_005337.1 + 80686 0.78 0.303595
Target:  5'- uUCCGCGCGCGCAUGUGCGCGa----- -3'
miRNA:   3'- -GGGUGCGCGCGUGCGUGUGCcaaaug -5'
25783 3' -55.2 NC_005337.1 + 88332 0.78 0.303595
Target:  5'- gCCACGCGCGCcgGCGCGCGCGa----- -3'
miRNA:   3'- gGGUGCGCGCG--UGCGUGUGCcaaaug -5'
25783 3' -55.2 NC_005337.1 + 29717 0.78 0.303595
Target:  5'- gCgAgGCGCGCACGCGCGCGcGgugUUGCg -3'
miRNA:   3'- gGgUgCGCGCGUGCGUGUGC-Ca--AAUG- -5'
25783 3' -55.2 NC_005337.1 + 128791 0.78 0.317966
Target:  5'- gUCCACGgGCGUGCGCACcgaGCGGUgccGCa -3'
miRNA:   3'- -GGGUGCgCGCGUGCGUG---UGCCAaa-UG- -5'
25783 3' -55.2 NC_005337.1 + 57881 0.78 0.325341
Target:  5'- gCCACGCcC-CGCGCGCACGGUgUACa -3'
miRNA:   3'- gGGUGCGcGcGUGCGUGUGCCAaAUG- -5'
25783 3' -55.2 NC_005337.1 + 112755 0.78 0.332842
Target:  5'- gCCGCGCGCGguCGCugcugaauaacGCGCGGUaUACu -3'
miRNA:   3'- gGGUGCGCGCguGCG-----------UGUGCCAaAUG- -5'
25783 3' -55.2 NC_005337.1 + 105781 0.78 0.34047
Target:  5'- gCCGCGCGcCGCGCGCcGCGCGGcc-GCa -3'
miRNA:   3'- gGGUGCGC-GCGUGCG-UGUGCCaaaUG- -5'
25783 3' -55.2 NC_005337.1 + 126025 0.77 0.348224
Target:  5'- cCCCGCGCGUGCgugugucucauGCGCGC-CGGUgcggACg -3'
miRNA:   3'- -GGGUGCGCGCG-----------UGCGUGuGCCAaa--UG- -5'
25783 3' -55.2 NC_005337.1 + 117833 0.77 0.372232
Target:  5'- aCCCGgGCgggguGCGCACGCAgGCGGUgggggACa -3'
miRNA:   3'- -GGGUgCG-----CGCGUGCGUgUGCCAaa---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.