miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25792 5' -57.7 NC_005337.1 + 63558 0.66 0.85351
Target:  5'- aCCGUGcaCACGcACUCCuuggcgcgguCGCCGGUg -3'
miRNA:   3'- aGGCACuaGUGCuUGGGGu---------GCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 121987 0.66 0.845678
Target:  5'- aUCGUG--CGCGAGCuCCUGCGCgCGGg -3'
miRNA:   3'- aGGCACuaGUGCUUG-GGGUGCG-GCCa -5'
25792 5' -57.7 NC_005337.1 + 64256 0.66 0.845678
Target:  5'- -gCGgcgGcUCugGGACCCgggCGCGCCGGa -3'
miRNA:   3'- agGCa--CuAGugCUUGGG---GUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 55674 0.66 0.845678
Target:  5'- gUCCGUGAUCGagcaGAGCgugCUCAUGuacCCGGUg -3'
miRNA:   3'- -AGGCACUAGUg---CUUG---GGGUGC---GGCCA- -5'
25792 5' -57.7 NC_005337.1 + 47653 0.66 0.845678
Target:  5'- gCUGUGA---CGAGCCCgGCGcCCGGc -3'
miRNA:   3'- aGGCACUaguGCUUGGGgUGC-GGCCa -5'
25792 5' -57.7 NC_005337.1 + 84714 0.66 0.845678
Target:  5'- cCCGUa--CACGAcguguuCCCgGCGCCGGa -3'
miRNA:   3'- aGGCAcuaGUGCUu-----GGGgUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 36242 0.66 0.845678
Target:  5'- cCCGg----ACGAACCCCAgccCGUCGGUg -3'
miRNA:   3'- aGGCacuagUGCUUGGGGU---GCGGCCA- -5'
25792 5' -57.7 NC_005337.1 + 21685 0.66 0.837657
Target:  5'- aCC-UGGUCACGAcguuuCCgCACGCCGuGg -3'
miRNA:   3'- aGGcACUAGUGCUu----GGgGUGCGGC-Ca -5'
25792 5' -57.7 NC_005337.1 + 61253 0.66 0.837657
Target:  5'- cUCCGUGAccUCgACGGGCCUguccuucuucuuCGCGCCGc- -3'
miRNA:   3'- -AGGCACU--AG-UGCUUGGG------------GUGCGGCca -5'
25792 5' -57.7 NC_005337.1 + 123293 0.66 0.836844
Target:  5'- gUCCGUGccgCACGcGCUgcgcggaUCGCGCCGGc -3'
miRNA:   3'- -AGGCACua-GUGCuUGG-------GGUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 100930 0.66 0.829453
Target:  5'- aCCGUGcgCACcGACCCCAgcaaGCCcuGGa -3'
miRNA:   3'- aGGCACuaGUGcUUGGGGUg---CGG--CCa -5'
25792 5' -57.7 NC_005337.1 + 103187 0.66 0.829453
Target:  5'- cUCGUGGccUCGCuGAACCCCGCGaucgUGGa -3'
miRNA:   3'- aGGCACU--AGUG-CUUGGGGUGCg---GCCa -5'
25792 5' -57.7 NC_005337.1 + 90149 0.66 0.829453
Target:  5'- aUCCGccg-CACGGACUCgACGCCGa- -3'
miRNA:   3'- -AGGCacuaGUGCUUGGGgUGCGGCca -5'
25792 5' -57.7 NC_005337.1 + 58353 0.66 0.829453
Target:  5'- aCCGUGGccgcgcucuUCGCGGACUUCGCGCgcaacgucggCGGg -3'
miRNA:   3'- aGGCACU---------AGUGCUUGGGGUGCG----------GCCa -5'
25792 5' -57.7 NC_005337.1 + 12274 0.66 0.829453
Target:  5'- gCCG-GGUCGC--ACCCCGCGCgcaGGa -3'
miRNA:   3'- aGGCaCUAGUGcuUGGGGUGCGg--CCa -5'
25792 5' -57.7 NC_005337.1 + 62674 0.66 0.821074
Target:  5'- gUCCGUGAUCGCG---UCCACGuuGu- -3'
miRNA:   3'- -AGGCACUAGUGCuugGGGUGCggCca -5'
25792 5' -57.7 NC_005337.1 + 55789 0.66 0.821074
Target:  5'- uUCCGgGAgCGCG-ACCUgACGCUGGa -3'
miRNA:   3'- -AGGCaCUaGUGCuUGGGgUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 91351 0.66 0.821074
Target:  5'- gUCCcUGAgcgCGCGGAgCagCACGCCGGa -3'
miRNA:   3'- -AGGcACUa--GUGCUUgGg-GUGCGGCCa -5'
25792 5' -57.7 NC_005337.1 + 37249 0.66 0.812528
Target:  5'- -aCGcGGUCAgcgucuugcCGAACCCgCACGCCaGGUg -3'
miRNA:   3'- agGCaCUAGU---------GCUUGGG-GUGCGG-CCA- -5'
25792 5' -57.7 NC_005337.1 + 50604 0.66 0.812528
Target:  5'- aCCGcGAUCgACGA--CCUGCGCCGGc -3'
miRNA:   3'- aGGCaCUAG-UGCUugGGGUGCGGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.