miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25797 5' -51.4 NC_005337.1 + 34144 0.78 0.550234
Target:  5'- -cACGAGCaccacguuGGCGggGAAGGCGGUCa -3'
miRNA:   3'- gcUGCUCGgu------CUGCuuCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 3011 0.69 0.940884
Target:  5'- aGACGAGCCGcACGAAGGAcucCGAg- -3'
miRNA:   3'- gCUGCUCGGUcUGCUUCUUcu-GCUag -5'
25797 5' -51.4 NC_005337.1 + 66570 0.69 0.949989
Target:  5'- aCGACGGGUCcgagauAGACGcccAGGAGACGGc- -3'
miRNA:   3'- -GCUGCUCGG------UCUGCu--UCUUCUGCUag -5'
25797 5' -51.4 NC_005337.1 + 63355 0.66 0.990039
Target:  5'- uGGUGucGCC-GAaGAAGAAGACGAUCa -3'
miRNA:   3'- gCUGCu-CGGuCUgCUUCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 59101 0.74 0.748207
Target:  5'- gGACGcgcGCgAGGCGAcGAGGGCGGUCc -3'
miRNA:   3'- gCUGCu--CGgUCUGCUuCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 9378 0.71 0.894341
Target:  5'- gCGuuCGAGCCAGACGgcGAGGuccuCGGa- -3'
miRNA:   3'- -GCu-GCUCGGUCUGCuuCUUCu---GCUag -5'
25797 5' -51.4 NC_005337.1 + 14700 0.7 0.901041
Target:  5'- uCGAUGAGCguGAUGGuuguGAGACGAUg -3'
miRNA:   3'- -GCUGCUCGguCUGCUuc--UUCUGCUAg -5'
25797 5' -51.4 NC_005337.1 + 71863 0.7 0.907492
Target:  5'- aCGACGAcGCCacGGGCGAGGc-GGCGGUg -3'
miRNA:   3'- -GCUGCU-CGG--UCUGCUUCuuCUGCUAg -5'
25797 5' -51.4 NC_005337.1 + 160 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 100339 0.7 0.925332
Target:  5'- uCGACGuGgCGGACGu-GAAGGCGcUCg -3'
miRNA:   3'- -GCUGCuCgGUCUGCuuCUUCUGCuAG- -5'
25797 5' -51.4 NC_005337.1 + 282 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 99 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 116963 0.77 0.581445
Target:  5'- aCGugGuGCUgcaGGACGAGGAGGGCGggCa -3'
miRNA:   3'- -GCugCuCGG---UCUGCUUCUUCUGCuaG- -5'
25797 5' -51.4 NC_005337.1 + 343 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 32106 0.75 0.665787
Target:  5'- uGACGuGCgAGGCGGAGAuGGACGAg- -3'
miRNA:   3'- gCUGCuCGgUCUGCUUCU-UCUGCUag -5'
25797 5' -51.4 NC_005337.1 + 46 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 404 0.7 0.913692
Target:  5'- gGACGGGCUGacuCGAgaacucGGGAGGCGGUCg -3'
miRNA:   3'- gCUGCUCGGUcu-GCU------UCUUCUGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 28893 0.69 0.945105
Target:  5'- aGACGugcaaccGGCCGGGCGccGAGGugaccaagcacGCGAUCg -3'
miRNA:   3'- gCUGC-------UCGGUCUGCuuCUUC-----------UGCUAG- -5'
25797 5' -51.4 NC_005337.1 + 42278 0.74 0.748207
Target:  5'- uCGACGGGCUggagaagcucauGGGCGAcgAGGAGACGGa- -3'
miRNA:   3'- -GCUGCUCGG------------UCUGCU--UCUUCUGCUag -5'
25797 5' -51.4 NC_005337.1 + 80040 0.71 0.894341
Target:  5'- gGACGcGCCGGACGAGGA----GAUCu -3'
miRNA:   3'- gCUGCuCGGUCUGCUUCUucugCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.