Results 1 - 20 of 88 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25897 | 5' | -52.6 | NC_005337.1 | + | 58159 | 0.79 | 0.309071 |
Target: 5'- -cCUUCGCGCGCAagcGCGuGCGCAUGa- -3' miRNA: 3'- aaGAAGCGCGCGU---UGUuCGCGUACau -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 3104 | 0.69 | 0.838057 |
Target: 5'- -cCUcCGCGCGCAucaGCAgcAGCaGCGUGUGc -3' miRNA: 3'- aaGAaGCGCGCGU---UGU--UCG-CGUACAU- -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 34007 | 0.69 | 0.846653 |
Target: 5'- cUCUUgCGCGCGCggUAGGUGCu---- -3' miRNA: 3'- aAGAA-GCGCGCGuuGUUCGCGuacau -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 4468 | 0.66 | 0.954824 |
Target: 5'- ---aUCGaCGCGCGGCAGGUGCu---- -3' miRNA: 3'- aagaAGC-GCGCGUUGUUCGCGuacau -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 36506 | 0.74 | 0.57044 |
Target: 5'- -cCUUCuCGCGCAGCGcGCGCGUGa- -3' miRNA: 3'- aaGAAGcGCGCGUUGUuCGCGUACau -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 25310 | 0.74 | 0.591958 |
Target: 5'- ----cCGCGCGuCGACcGGCGCGUGUAc -3' miRNA: 3'- aagaaGCGCGC-GUUGuUCGCGUACAU- -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 55165 | 0.73 | 0.602771 |
Target: 5'- gUCUUCGUGCGCGucgACGAcGUGCcgGUGg -3' miRNA: 3'- aAGAAGCGCGCGU---UGUU-CGCGuaCAU- -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 127879 | 0.73 | 0.657021 |
Target: 5'- gUCUgguggCGCGCGgcgcCGGCGAGCGCGUGc- -3' miRNA: 3'- aAGAa----GCGCGC----GUUGUUCGCGUACau -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 6199 | 0.7 | 0.772506 |
Target: 5'- gUC-UCGgGCGCGGCGAcUGCAUGUGg -3' miRNA: 3'- aAGaAGCgCGCGUUGUUcGCGUACAU- -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 102849 | 0.69 | 0.829249 |
Target: 5'- gUCgggcCGCGCGcCAGgAAGUGCAUGUu -3' miRNA: 3'- aAGaa--GCGCGC-GUUgUUCGCGUACAu -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 118235 | 0.7 | 0.801654 |
Target: 5'- ----cCGCGCgGCGGCAggcgccgcAGCGCGUGUAc -3' miRNA: 3'- aagaaGCGCG-CGUUGU--------UCGCGUACAU- -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 35029 | 0.71 | 0.752352 |
Target: 5'- gUCgcCGUcCGCGGCGAGCGCGUGg- -3' miRNA: 3'- aAGaaGCGcGCGUUGUUCGCGUACau -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 58375 | 0.78 | 0.356841 |
Target: 5'- -aCUUCGCGCGCAACGucggcgGGCGCAcGUu -3' miRNA: 3'- aaGAAGCGCGCGUUGU------UCGCGUaCAu -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 81547 | 0.7 | 0.811039 |
Target: 5'- -gCUUCagcucgGCGCGCAGCucGCGCAgGUAg -3' miRNA: 3'- aaGAAG------CGCGCGUUGuuCGCGUaCAU- -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 2499 | 0.75 | 0.507288 |
Target: 5'- ----aCGCGCGCAGC-AGCGUGUGUGc -3' miRNA: 3'- aagaaGCGCGCGUUGuUCGCGUACAU- -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 24983 | 0.72 | 0.710699 |
Target: 5'- cUUCUUCG-GCuGCAACGcGCGCAUGg- -3' miRNA: 3'- -AAGAAGCgCG-CGUUGUuCGCGUACau -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 84159 | 0.69 | 0.829249 |
Target: 5'- ----aUGCGCGcCAGCGAGCGCccGUGu -3' miRNA: 3'- aagaaGCGCGC-GUUGUUCGCGuaCAU- -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 31157 | 0.69 | 0.846653 |
Target: 5'- ---gUCGCGCuGCGgguACGAGCGgAUGUAg -3' miRNA: 3'- aagaAGCGCG-CGU---UGUUCGCgUACAU- -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 99220 | 0.75 | 0.517626 |
Target: 5'- cUUCUUCGCGCGCAuaAAGCcCGUGUc -3' miRNA: 3'- -AAGAAGCGCGCGUugUUCGcGUACAu -5' |
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25897 | 5' | -52.6 | NC_005337.1 | + | 45938 | 0.73 | 0.602771 |
Target: 5'- gUCUucUCGCGCGCGcCGGcGCGCGUGg- -3' miRNA: 3'- aAGA--AGCGCGCGUuGUU-CGCGUACau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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