miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25902 5' -54.9 NC_005337.1 + 132602 0.67 0.880273
Target:  5'- uGCGGCUgcgguUCAGGuucGCgaCGCGCcugcgaguGUGAGCa -3'
miRNA:   3'- -CGUCGA-----AGUCCu--CGa-GCGCG--------CACUUG- -5'
25902 5' -54.9 NC_005337.1 + 131650 0.69 0.7691
Target:  5'- --cGCUUCgAGGAGCcCGUGCGcgccgcgcUGAACg -3'
miRNA:   3'- cguCGAAG-UCCUCGaGCGCGC--------ACUUG- -5'
25902 5' -54.9 NC_005337.1 + 130162 0.66 0.907324
Target:  5'- cGCGcGCUUUcGGAgGCcgugCGCGCG-GAGCa -3'
miRNA:   3'- -CGU-CGAAGuCCU-CGa---GCGCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 128028 0.66 0.907324
Target:  5'- cCAGCgUCAGcGAcGCugacUCGCGCGgGGACa -3'
miRNA:   3'- cGUCGaAGUC-CU-CG----AGCGCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 127890 0.67 0.849532
Target:  5'- cGCGGCgcCGGcGAGCgCGUGCGggccGAGCc -3'
miRNA:   3'- -CGUCGaaGUC-CUCGaGCGCGCa---CUUG- -5'
25902 5' -54.9 NC_005337.1 + 122373 0.68 0.841314
Target:  5'- gGCAGCUUCuGGAuCUCcaaCGCG-GGGCa -3'
miRNA:   3'- -CGUCGAAGuCCUcGAGc--GCGCaCUUG- -5'
25902 5' -54.9 NC_005337.1 + 118238 0.69 0.7691
Target:  5'- cGCGGCggCAGGcGCcgcaGCGCGUGuACc -3'
miRNA:   3'- -CGUCGaaGUCCuCGag--CGCGCACuUG- -5'
25902 5' -54.9 NC_005337.1 + 118177 0.71 0.68874
Target:  5'- cGCGGCggacccgUucGAGCUCGCGCcgGUGGGCg -3'
miRNA:   3'- -CGUCGaa-----GucCUCGAGCGCG--CACUUG- -5'
25902 5' -54.9 NC_005337.1 + 118085 0.67 0.865342
Target:  5'- -gAGCUccUCGGG-GCUCuccgGCGCGUGGu- -3'
miRNA:   3'- cgUCGA--AGUCCuCGAG----CGCGCACUug -5'
25902 5' -54.9 NC_005337.1 + 110500 0.7 0.739652
Target:  5'- cCAGCUcgacguGGcGCUCGCGCGUGGu- -3'
miRNA:   3'- cGUCGAagu---CCuCGAGCGCGCACUug -5'
25902 5' -54.9 NC_005337.1 + 110373 0.68 0.832897
Target:  5'- gGCAGCcgUCccacgggcguGGGGuuGCUgaUGCGCGUGAACc -3'
miRNA:   3'- -CGUCGa-AG----------UCCU--CGA--GCGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 109578 0.69 0.778673
Target:  5'- aGCAGCc-CAGGuGCUUgaaGCGCcUGAGCa -3'
miRNA:   3'- -CGUCGaaGUCCuCGAG---CGCGcACUUG- -5'
25902 5' -54.9 NC_005337.1 + 108892 0.69 0.749579
Target:  5'- aCGGCggCGGcAGCgaGCGCGUGAGCa -3'
miRNA:   3'- cGUCGaaGUCcUCGagCGCGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 106560 0.67 0.865342
Target:  5'- aGCGcGCUgCGGGAGaUCGUgcagccggugGCGUGGACg -3'
miRNA:   3'- -CGU-CGAaGUCCUCgAGCG----------CGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 105805 0.66 0.900923
Target:  5'- cGCAuccguGCUcCAGGAGCUCGacaaguacauCGuCGUGAAg -3'
miRNA:   3'- -CGU-----CGAaGUCCUCGAGC----------GC-GCACUUg -5'
25902 5' -54.9 NC_005337.1 + 104277 0.74 0.473641
Target:  5'- cGCAGCa--AGGAGUUCGCGCGg--GCg -3'
miRNA:   3'- -CGUCGaagUCCUCGAGCGCGCacuUG- -5'
25902 5' -54.9 NC_005337.1 + 102305 0.69 0.788108
Target:  5'- uGCAGCagUCcaugcgccuGGGGCUC-CGCGUGGAg -3'
miRNA:   3'- -CGUCGa-AGu--------CCUCGAGcGCGCACUUg -5'
25902 5' -54.9 NC_005337.1 + 101556 0.66 0.900923
Target:  5'- cGUGGaCUUCcucaAGGAGCU-GCuCGUGAGCg -3'
miRNA:   3'- -CGUC-GAAG----UCCUCGAgCGcGCACUUG- -5'
25902 5' -54.9 NC_005337.1 + 99586 0.67 0.87292
Target:  5'- uGCGgcGCUUCGGGcGGgaCuGCGCcGUGAGCa -3'
miRNA:   3'- -CGU--CGAAGUCC-UCgaG-CGCG-CACUUG- -5'
25902 5' -54.9 NC_005337.1 + 99313 0.67 0.890176
Target:  5'- cGCAGCgcCGGGucgucgacuGCUCGCagcgcugcuucaugcGCGUGAAg -3'
miRNA:   3'- -CGUCGaaGUCCu--------CGAGCG---------------CGCACUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.