miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25924 3' -56 NC_005337.1 + 131894 0.74 0.414391
Target:  5'- aGGCgGGCGCGCACGUGgacGCGgucgaCCGGUGc -3'
miRNA:   3'- -UUG-CCGUGUGUGCACa--CGUa----GGCCAC- -5'
25924 3' -56 NC_005337.1 + 128712 0.66 0.875464
Target:  5'- cGCGGCugGCGCGcGUGUAccgcgagccgcUCUGGa- -3'
miRNA:   3'- uUGCCGugUGUGCaCACGU-----------AGGCCac -5'
25924 3' -56 NC_005337.1 + 127890 0.69 0.703698
Target:  5'- cGCGGCGCcggcgaGCGCGUGcggGCcgagCCGGUGc -3'
miRNA:   3'- uUGCCGUG------UGUGCACa--CGua--GGCCAC- -5'
25924 3' -56 NC_005337.1 + 127779 0.68 0.782516
Target:  5'- uGACGGa--GCGCGUgGUGCGggugCUGGUGg -3'
miRNA:   3'- -UUGCCgugUGUGCA-CACGUa---GGCCAC- -5'
25924 3' -56 NC_005337.1 + 123117 0.67 0.809137
Target:  5'- cACGGCGaGCACGUcGUGCggcgcccGUCgCGGUGc -3'
miRNA:   3'- uUGCCGUgUGUGCA-CACG-------UAG-GCCAC- -5'
25924 3' -56 NC_005337.1 + 122806 0.68 0.773052
Target:  5'- cGCGGC-CAUcgaccgcaGCGUGcGCGUCCGcGUGa -3'
miRNA:   3'- uUGCCGuGUG--------UGCACaCGUAGGC-CAC- -5'
25924 3' -56 NC_005337.1 + 122540 0.71 0.610439
Target:  5'- cGCGGCgACGCGCGc-UGCAgCCGGUGc -3'
miRNA:   3'- uUGCCG-UGUGUGCacACGUaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 113160 0.66 0.852438
Target:  5'- cGCGGUGCGCuGCGUG-GCggCCGGc- -3'
miRNA:   3'- uUGCCGUGUG-UGCACaCGuaGGCCac -5'
25924 3' -56 NC_005337.1 + 104879 1.05 0.004096
Target:  5'- aAACGGCACACACGUGUGCAUCCGGUGc -3'
miRNA:   3'- -UUGCCGUGUGUGCACACGUAGGCCAC- -5'
25924 3' -56 NC_005337.1 + 104558 0.66 0.874729
Target:  5'- cACcGCGCGCGCGUGcGCGccucgcgcguccgUCCGGUc -3'
miRNA:   3'- uUGcCGUGUGUGCACaCGU-------------AGGCCAc -5'
25924 3' -56 NC_005337.1 + 102756 0.66 0.868007
Target:  5'- cGCGGCACcuGCAcCGUGaGCAUCCacGUGc -3'
miRNA:   3'- uUGCCGUG--UGU-GCACaCGUAGGc-CAC- -5'
25924 3' -56 NC_005337.1 + 100097 0.69 0.703698
Target:  5'- cGCGGCGCGcCGCGUGgagcugcGCAUCCccGUGg -3'
miRNA:   3'- uUGCCGUGU-GUGCACa------CGUAGGc-CAC- -5'
25924 3' -56 NC_005337.1 + 89294 0.67 0.810031
Target:  5'- gGACGGCgGCGaGCGUGUuggagcGCAgCCGGUGc -3'
miRNA:   3'- -UUGCCG-UGUgUGCACA------CGUaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 88761 0.66 0.867249
Target:  5'- cGCGGCgccgACACcgACGUggaggccuucgacGUGCGUCCGGa- -3'
miRNA:   3'- uUGCCG----UGUG--UGCA-------------CACGUAGGCCac -5'
25924 3' -56 NC_005337.1 + 83419 0.67 0.810031
Target:  5'- aGAUGGCGCcCACGa--GCAUCuCGGUGc -3'
miRNA:   3'- -UUGCCGUGuGUGCacaCGUAG-GCCAC- -5'
25924 3' -56 NC_005337.1 + 82148 0.69 0.703698
Target:  5'- uGGCGGCGCACACG-GUGgcggccacgucCGUcCCGGUc -3'
miRNA:   3'- -UUGCCGUGUGUGCaCAC-----------GUA-GGCCAc -5'
25924 3' -56 NC_005337.1 + 76843 0.66 0.844341
Target:  5'- cGCaGCGCACGCGguagaUGgacggGCGUCCGGa- -3'
miRNA:   3'- uUGcCGUGUGUGC-----ACa----CGUAGGCCac -5'
25924 3' -56 NC_005337.1 + 73441 0.67 0.810031
Target:  5'- gAGCGaCACGCGCGUGcuCAUCCGcGUGc -3'
miRNA:   3'- -UUGCcGUGUGUGCACacGUAGGC-CAC- -5'
25924 3' -56 NC_005337.1 + 70354 0.66 0.868007
Target:  5'- cACGGCGgugcgccgcCGCACGUGgucGCGUCCGu-- -3'
miRNA:   3'- uUGCCGU---------GUGUGCACa--CGUAGGCcac -5'
25924 3' -56 NC_005337.1 + 69230 0.66 0.875464
Target:  5'- gAACGuGCGCGCGCGccUG-GaCGUgCCGGUGa -3'
miRNA:   3'- -UUGC-CGUGUGUGC--ACaC-GUA-GGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.