miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25924 3' -56 NC_005337.1 + 131894 0.74 0.414391
Target:  5'- aGGCgGGCGCGCACGUGgacGCGgucgaCCGGUGc -3'
miRNA:   3'- -UUG-CCGUGUGUGCACa--CGUa----GGCCAC- -5'
25924 3' -56 NC_005337.1 + 48887 0.66 0.852438
Target:  5'- gAGCGcCGCGCACGgcuccaGUGCAUCuCGGa- -3'
miRNA:   3'- -UUGCcGUGUGUGCa-----CACGUAG-GCCac -5'
25924 3' -56 NC_005337.1 + 8879 0.66 0.868007
Target:  5'- uGACGGCACGCAgCGUGUcggGCGUuaCCGu-- -3'
miRNA:   3'- -UUGCCGUGUGU-GCACA---CGUA--GGCcac -5'
25924 3' -56 NC_005337.1 + 25115 0.66 0.882697
Target:  5'- cGCGGCGCGCGCGgacgcGUGaaUAUUCGGc- -3'
miRNA:   3'- uUGCCGUGUGUGCa----CAC--GUAGGCCac -5'
25924 3' -56 NC_005337.1 + 100097 0.69 0.703698
Target:  5'- cGCGGCGCGcCGCGUGgagcugcGCAUCCccGUGg -3'
miRNA:   3'- uUGCCGUGU-GUGCACa------CGUAGGc-CAC- -5'
25924 3' -56 NC_005337.1 + 127890 0.69 0.703698
Target:  5'- cGCGGCGCcggcgaGCGCGUGcggGCcgagCCGGUGc -3'
miRNA:   3'- uUGCCGUG------UGUGCACa--CGua--GGCCAC- -5'
25924 3' -56 NC_005337.1 + 122806 0.68 0.773052
Target:  5'- cGCGGC-CAUcgaccgcaGCGUGcGCGUCCGcGUGa -3'
miRNA:   3'- uUGCCGuGUG--------UGCACaCGUAGGC-CAC- -5'
25924 3' -56 NC_005337.1 + 3384 0.68 0.773052
Target:  5'- cGugGGCgagaaGCGCGCGUGcGCcAUCUGGUa -3'
miRNA:   3'- -UugCCG-----UGUGUGCACaCG-UAGGCCAc -5'
25924 3' -56 NC_005337.1 + 83419 0.67 0.810031
Target:  5'- aGAUGGCGCcCACGa--GCAUCuCGGUGc -3'
miRNA:   3'- -UUGCCGUGuGUGCacaCGUAG-GCCAC- -5'
25924 3' -56 NC_005337.1 + 76843 0.66 0.844341
Target:  5'- cGCaGCGCACGCGguagaUGgacggGCGUCCGGa- -3'
miRNA:   3'- uUGcCGUGUGUGC-----ACa----CGUAGGCCac -5'
25924 3' -56 NC_005337.1 + 5992 0.67 0.818881
Target:  5'- --aGGCGCGCGCGU-UGCAgaccgCCGcGUGc -3'
miRNA:   3'- uugCCGUGUGUGCAcACGUa----GGC-CAC- -5'
25924 3' -56 NC_005337.1 + 73441 0.67 0.810031
Target:  5'- gAGCGaCACGCGCGUGcuCAUCCGcGUGc -3'
miRNA:   3'- -UUGCcGUGUGUGCACacGUAGGC-CAC- -5'
25924 3' -56 NC_005337.1 + 67516 0.71 0.60005
Target:  5'- cAGCGGCcCGCGCGUGcgGCggUUGGUGa -3'
miRNA:   3'- -UUGCCGuGUGUGCACa-CGuaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 18775 0.67 0.824971
Target:  5'- cGAgGGCGCACcugACGUccacggccccgugcGUGCA-CCGGUGc -3'
miRNA:   3'- -UUgCCGUGUG---UGCA--------------CACGUaGGCCAC- -5'
25924 3' -56 NC_005337.1 + 29395 0.7 0.671808
Target:  5'- -cCGGaUGCACACGUGUGUgccguuuAUCCGGg- -3'
miRNA:   3'- uuGCC-GUGUGUGCACACG-------UAGGCCac -5'
25924 3' -56 NC_005337.1 + 43073 0.68 0.79184
Target:  5'- cGGCGGCGCGCcCGUccGCAUCgCGGc- -3'
miRNA:   3'- -UUGCCGUGUGuGCAcaCGUAG-GCCac -5'
25924 3' -56 NC_005337.1 + 2623 0.67 0.827554
Target:  5'- cGCGGCGCGCACGg--GC-UCCucgaagcggaaGGUGg -3'
miRNA:   3'- uUGCCGUGUGUGCacaCGuAGG-----------CCAC- -5'
25924 3' -56 NC_005337.1 + 113160 0.66 0.852438
Target:  5'- cGCGGUGCGCuGCGUG-GCggCCGGc- -3'
miRNA:   3'- uUGCCGUGUG-UGCACaCGuaGGCCac -5'
25924 3' -56 NC_005337.1 + 10882 0.69 0.703698
Target:  5'- gGGCGaGCAC-CACGUGUGCGgggaCGGg- -3'
miRNA:   3'- -UUGC-CGUGuGUGCACACGUag--GCCac -5'
25924 3' -56 NC_005337.1 + 57956 0.69 0.723972
Target:  5'- cACGGcCACGCcCGUGgucaacaGCGUCCGGg- -3'
miRNA:   3'- uUGCC-GUGUGuGCACa------CGUAGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.