miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25939 5' -48.3 NC_005337.1 + 111166 0.66 0.998943
Target:  5'- aCGGCGGGGUugaaguUGCUgaccaccgCGCGCa -3'
miRNA:   3'- cGUUGCCCCAu-----GCGAaaaaa---GUGCGg -5'
25939 5' -48.3 NC_005337.1 + 34492 0.66 0.998965
Target:  5'- cGCGAUGcGGGUAacccaugcacuCGCaggccauUUUUaUCGCGCCc -3'
miRNA:   3'- -CGUUGC-CCCAU-----------GCG-------AAAAaAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 132761 0.66 0.998985
Target:  5'- aGUGGCGGac-GCGCUggcg-CGCGCCg -3'
miRNA:   3'- -CGUUGCCccaUGCGAaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 5554 0.66 0.998761
Target:  5'- aGCAGCGGcucgcGGUACaCg-----CGCGCCa -3'
miRNA:   3'- -CGUUGCC-----CCAUGcGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 131028 0.66 0.999438
Target:  5'- cGCAACGacaaGGcGUGCGCgcgccucCugGCCc -3'
miRNA:   3'- -CGUUGC----CC-CAUGCGaaaaaa-GugCGG- -5'
25939 5' -48.3 NC_005337.1 + 80047 0.66 0.999331
Target:  5'- cGCuggcGCGGcGG-ACGCUgucaucCGCGCCc -3'
miRNA:   3'- -CGu---UGCC-CCaUGCGAaaaaa-GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 60880 0.66 0.998985
Target:  5'- aGCuGCGGGuGcggGCGCgccgagUACGCCu -3'
miRNA:   3'- -CGuUGCCC-Ca--UGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 107004 0.66 0.998985
Target:  5'- -aGGCGGGcGcagagACGCgg--UUCACGCUc -3'
miRNA:   3'- cgUUGCCC-Ca----UGCGaaaaAAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 83972 0.66 0.999438
Target:  5'- gGCAGCGGcg-GCGCgggcgggCACGUCu -3'
miRNA:   3'- -CGUUGCCccaUGCGaaaaaa-GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 64227 0.66 0.999331
Target:  5'- cGCGACGGGcaGCGCcucUUUgcgGCGCUg -3'
miRNA:   3'- -CGUUGCCCcaUGCGaa-AAAag-UGCGG- -5'
25939 5' -48.3 NC_005337.1 + 29099 0.66 0.999331
Target:  5'- cGCGAagcaGGGGUcgaccACGCcgUgca-GCGCCa -3'
miRNA:   3'- -CGUUg---CCCCA-----UGCGaaAaaagUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 78563 0.66 0.999386
Target:  5'- aGCAGCGGGuuGUGgGCcuccauggGCGCCg -3'
miRNA:   3'- -CGUUGCCC--CAUgCGaaaaaag-UGCGG- -5'
25939 5' -48.3 NC_005337.1 + 82975 0.66 0.998985
Target:  5'- cCAGC-GGGUGCGag-UUgcucacgcUCACGCCg -3'
miRNA:   3'- cGUUGcCCCAUGCgaaAAa-------AGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 33242 0.66 0.998761
Target:  5'- cGCAgaaACGGGcccACGCgaguc-CACGCCa -3'
miRNA:   3'- -CGU---UGCCCca-UGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 52118 0.66 0.99924
Target:  5'- cGCGACGGGccggccauggccuucGUggACGCgug--UCGCGCg -3'
miRNA:   3'- -CGUUGCCC---------------CA--UGCGaaaaaAGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 123177 0.66 0.999331
Target:  5'- --uACGGagaGGUGCGCgug---UACGCCg -3'
miRNA:   3'- cguUGCC---CCAUGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 103301 0.66 0.999331
Target:  5'- cGCAugaACGaGGUGCGCaucaacUUCgGCGCCg -3'
miRNA:   3'- -CGU---UGCcCCAUGCGaaaa--AAG-UGCGG- -5'
25939 5' -48.3 NC_005337.1 + 62768 0.66 0.998985
Target:  5'- cGCGGCGGuGGaACGCgaag-UCGgGCa -3'
miRNA:   3'- -CGUUGCC-CCaUGCGaaaaaAGUgCGg -5'
25939 5' -48.3 NC_005337.1 + 68507 0.66 0.998985
Target:  5'- gGCGGcCGuGGGUGCGCc-----CGCGCUc -3'
miRNA:   3'- -CGUU-GC-CCCAUGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 128277 0.66 0.998985
Target:  5'- uGCAcGCGGcGGUcugcaACGCg-----CGCGCCu -3'
miRNA:   3'- -CGU-UGCC-CCA-----UGCGaaaaaaGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.