miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25939 5' -48.3 NC_005337.1 + 116998 1.16 0.005499
Target:  5'- uGCAACGGGGUACGCUUUUUUCACGCCa -3'
miRNA:   3'- -CGUUGCCCCAUGCGAAAAAAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 17306 0.87 0.314293
Target:  5'- gGCAACGGGGUACGCUUUUUaUCuagaaaGCUg -3'
miRNA:   3'- -CGUUGCCCCAUGCGAAAAA-AGug----CGG- -5'
25939 5' -48.3 NC_005337.1 + 8293 0.84 0.402484
Target:  5'- uGCAGCGGGGUcugcagccGCGCguuccgcgcgUUCACGCCc -3'
miRNA:   3'- -CGUUGCCCCA--------UGCGaaaa------AAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 98124 0.8 0.60177
Target:  5'- cGCAGCGGGGUGaGCauggacccgCACGCCg -3'
miRNA:   3'- -CGUUGCCCCAUgCGaaaaaa---GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 47983 0.8 0.629806
Target:  5'- -gGACGGGGcGCGCU----UCGCGCCc -3'
miRNA:   3'- cgUUGCCCCaUGCGAaaaaAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 726 0.76 0.827258
Target:  5'- gGCcGCGGGGUACGCgggcgagaGCGCg -3'
miRNA:   3'- -CGuUGCCCCAUGCGaaaaaag-UGCGg -5'
25939 5' -48.3 NC_005337.1 + 726 0.76 0.827258
Target:  5'- gGCcGCGGGGUACGCgggcgagaGCGCg -3'
miRNA:   3'- -CGuUGCCCCAUGCGaaaaaag-UGCGg -5'
25939 5' -48.3 NC_005337.1 + 977 0.76 0.832563
Target:  5'- aGCGGCGGGGcugGCGCgg----CGCGCg -3'
miRNA:   3'- -CGUUGCCCCa--UGCGaaaaaaGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 977 0.76 0.832563
Target:  5'- aGCGGCGGGGcugGCGCgg----CGCGCg -3'
miRNA:   3'- -CGUUGCCCCa--UGCGaaaaaaGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 5049 0.75 0.846347
Target:  5'- uGCAGCGGGGUcGCGCcacagcaGCGCUc -3'
miRNA:   3'- -CGUUGCCCCA-UGCGaaaaaagUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 1441 0.75 0.848032
Target:  5'- cGCGGCGGcgccgaGGUGCGCgaccacgUACGCCa -3'
miRNA:   3'- -CGUUGCC------CCAUGCGaaaaaa-GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 76226 0.75 0.857956
Target:  5'- ---uCGGGGUugGCgag---CACGCCg -3'
miRNA:   3'- cguuGCCCCAugCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 91840 0.75 0.865976
Target:  5'- aCGACGGGGUugGCgaug-UC-CGUCa -3'
miRNA:   3'- cGUUGCCCCAugCGaaaaaAGuGCGG- -5'
25939 5' -48.3 NC_005337.1 + 36200 0.75 0.865976
Target:  5'- aCAGCGcGGGUuCGUcgUUUUUUGCGCCg -3'
miRNA:   3'- cGUUGC-CCCAuGCGa-AAAAAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 29280 0.73 0.926995
Target:  5'- gGCAGCGGGGgcuuggagaGCagggucaUCACGCCg -3'
miRNA:   3'- -CGUUGCCCCaug------CGaaaaa--AGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 10606 0.73 0.933002
Target:  5'- cGCcGCGGGGgagcggcgGCGCcaggacgaccgUCGCGCCg -3'
miRNA:   3'- -CGuUGCCCCa-------UGCGaaaaa------AGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 6123 0.73 0.937677
Target:  5'- uGCAGCGGcGUGCGUccgagcgcgUUUCGCGCg -3'
miRNA:   3'- -CGUUGCCcCAUGCGaaa------AAAGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 33920 0.73 0.937677
Target:  5'- cGCGACGucGUcCGCUUUUUcCugGCCg -3'
miRNA:   3'- -CGUUGCccCAuGCGAAAAAaGugCGG- -5'
25939 5' -48.3 NC_005337.1 + 10440 0.73 0.937677
Target:  5'- uGC-GCGGcGGUGCGCgcgucgUGCGCCa -3'
miRNA:   3'- -CGuUGCC-CCAUGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 3668 0.72 0.942621
Target:  5'- cGCAGuCGGGGgucuUGCg----UCGCGCCc -3'
miRNA:   3'- -CGUU-GCCCCau--GCGaaaaaAGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.