miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25939 5' -48.3 NC_005337.1 + 71287 0.69 0.990967
Target:  5'- cGUGGCGcuGGUGCGCUUccg-CACGCa -3'
miRNA:   3'- -CGUUGCc-CCAUGCGAAaaaaGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 67918 0.71 0.973066
Target:  5'- -gGACGGGaGUGcCGCggUggUCGCGCUc -3'
miRNA:   3'- cgUUGCCC-CAU-GCGaaAaaAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 132177 0.7 0.981995
Target:  5'- cGCGACGGaGGcgcugGCGCUggcgucgagCGCGCUc -3'
miRNA:   3'- -CGUUGCC-CCa----UGCGAaaaaa----GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 133570 0.7 0.984973
Target:  5'- gGCcGCGGGcGUGCGCgcgagcuuCGCCu -3'
miRNA:   3'- -CGuUGCCC-CAUGCGaaaaaaguGCGG- -5'
25939 5' -48.3 NC_005337.1 + 34157 0.7 0.985339
Target:  5'- uGCAacagguccACGGGGaUGCGCagcuccacgcggCGCGCCg -3'
miRNA:   3'- -CGU--------UGCCCC-AUGCGaaaaaa------GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 83906 0.69 0.98657
Target:  5'- gGguACGGGGgcgGCGCcug---CugGCCc -3'
miRNA:   3'- -CguUGCCCCa--UGCGaaaaaaGugCGG- -5'
25939 5' -48.3 NC_005337.1 + 34642 0.69 0.988187
Target:  5'- aCGGCGGGcGUcuCGCUcaucUUCACGCUg -3'
miRNA:   3'- cGUUGCCC-CAu-GCGAaaa-AAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 117657 0.69 0.98965
Target:  5'- aGCAGaaccCGGGGUACGUg---UUCGuCGaCCu -3'
miRNA:   3'- -CGUU----GCCCCAUGCGaaaaAAGU-GC-GG- -5'
25939 5' -48.3 NC_005337.1 + 34840 0.69 0.98965
Target:  5'- cGCAugAUGGGGcauaUAUGCggcgg-CGCGCCa -3'
miRNA:   3'- -CGU--UGCCCC----AUGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 110831 0.71 0.971906
Target:  5'- aGCAGCaGaGGUGCGUgaugcucgCGCGCCc -3'
miRNA:   3'- -CGUUGcC-CCAUGCGaaaaaa--GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 7059 0.71 0.967887
Target:  5'- gGCGGCGGGGUugcGCGCguagacgugcaGCGCg -3'
miRNA:   3'- -CGUUGCCCCA---UGCGaaaaaag----UGCGg -5'
25939 5' -48.3 NC_005337.1 + 37664 0.71 0.966904
Target:  5'- cGCGAUGGGcaccaccuUGCUg--UUCACGCCc -3'
miRNA:   3'- -CGUUGCCCcau-----GCGAaaaAAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 98124 0.8 0.60177
Target:  5'- cGCAGCGGGGUGaGCauggacccgCACGCCg -3'
miRNA:   3'- -CGUUGCCCCAUgCGaaaaaa---GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 726 0.76 0.827258
Target:  5'- gGCcGCGGGGUACGCgggcgagaGCGCg -3'
miRNA:   3'- -CGuUGCCCCAUGCGaaaaaag-UGCGg -5'
25939 5' -48.3 NC_005337.1 + 977 0.76 0.832563
Target:  5'- aGCGGCGGGGcugGCGCgg----CGCGCg -3'
miRNA:   3'- -CGUUGCCCCa--UGCGaaaaaaGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 1441 0.75 0.848032
Target:  5'- cGCGGCGGcgccgaGGUGCGCgaccacgUACGCCa -3'
miRNA:   3'- -CGUUGCC------CCAUGCGaaaaaa-GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 76226 0.75 0.857956
Target:  5'- ---uCGGGGUugGCgag---CACGCCg -3'
miRNA:   3'- cguuGCCCCAugCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 91840 0.75 0.865976
Target:  5'- aCGACGGGGUugGCgaug-UC-CGUCa -3'
miRNA:   3'- cGUUGCCCCAugCGaaaaaAGuGCGG- -5'
25939 5' -48.3 NC_005337.1 + 29280 0.73 0.926995
Target:  5'- gGCAGCGGGGgcuuggagaGCagggucaUCACGCCg -3'
miRNA:   3'- -CGUUGCCCCaug------CGaaaaa--AGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 10440 0.73 0.937677
Target:  5'- uGC-GCGGcGGUGCGCgcgucgUGCGCCa -3'
miRNA:   3'- -CGuUGCC-CCAUGCGaaaaaaGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.