miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25939 5' -48.3 NC_005337.1 + 679 0.67 0.998581
Target:  5'- aGCAGCGGGcccuUGCGCgcggaggcgaagcUCGCGCg -3'
miRNA:   3'- -CGUUGCCCc---AUGCGaaaaa--------AGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 679 0.67 0.998581
Target:  5'- aGCAGCGGGcccuUGCGCgcggaggcgaagcUCGCGCg -3'
miRNA:   3'- -CGUUGCCCc---AUGCGaaaaa--------AGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 726 0.76 0.827258
Target:  5'- gGCcGCGGGGUACGCgggcgagaGCGCg -3'
miRNA:   3'- -CGuUGCCCCAUGCGaaaaaag-UGCGg -5'
25939 5' -48.3 NC_005337.1 + 726 0.76 0.827258
Target:  5'- gGCcGCGGGGUACGCgggcgagaGCGCg -3'
miRNA:   3'- -CGuUGCCCCAUGCGaaaaaag-UGCGg -5'
25939 5' -48.3 NC_005337.1 + 855 0.68 0.993204
Target:  5'- gGCGGCGGGcaGCGCggg---CGCgGCCg -3'
miRNA:   3'- -CGUUGCCCcaUGCGaaaaaaGUG-CGG- -5'
25939 5' -48.3 NC_005337.1 + 855 0.68 0.993204
Target:  5'- gGCGGCGGGcaGCGCggg---CGCgGCCg -3'
miRNA:   3'- -CGUUGCCCcaUGCGaaaaaaGUG-CGG- -5'
25939 5' -48.3 NC_005337.1 + 977 0.76 0.832563
Target:  5'- aGCGGCGGGGcugGCGCgg----CGCGCg -3'
miRNA:   3'- -CGUUGCCCCa--UGCGaaaaaaGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 977 0.76 0.832563
Target:  5'- aGCGGCGGGGcugGCGCgg----CGCGCg -3'
miRNA:   3'- -CGUUGCCCCa--UGCGaaaaaaGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 1340 0.67 0.996912
Target:  5'- cGCGGCGGcGGUAguugaacucCGCgc---UCGCGUCa -3'
miRNA:   3'- -CGUUGCC-CCAU---------GCGaaaaaAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 1441 0.75 0.848032
Target:  5'- cGCGGCGGcgccgaGGUGCGCgaccacgUACGCCa -3'
miRNA:   3'- -CGUUGCC------CCAUGCGaaaaaa-GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 3668 0.72 0.942621
Target:  5'- cGCAGuCGGGGgucuUGCg----UCGCGCCc -3'
miRNA:   3'- -CGUU-GCCCCau--GCGaaaaaAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 4399 0.67 0.997703
Target:  5'- aGCGGCGagaugccguaucgaGGGUugaGCacg-UUCACGCCg -3'
miRNA:   3'- -CGUUGC--------------CCCAug-CGaaaaAAGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 4819 0.7 0.978352
Target:  5'- uGCAGCGGuGUGCGgUc----CACGCCg -3'
miRNA:   3'- -CGUUGCCcCAUGCgAaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 4961 0.68 0.996228
Target:  5'- aCAACGGGGaguUGCcggagcgCGCGCCc -3'
miRNA:   3'- cGUUGCCCCau-GCGaaaaaa-GUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 5049 0.75 0.846347
Target:  5'- uGCAGCGGGGUcGCGCcacagcaGCGCUc -3'
miRNA:   3'- -CGUUGCCCCA-UGCGaaaaaagUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 5554 0.66 0.998761
Target:  5'- aGCAGCGGcucgcGGUACaCg-----CGCGCCa -3'
miRNA:   3'- -CGUUGCC-----CCAUGcGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 6123 0.73 0.937677
Target:  5'- uGCAGCGGcGUGCGUccgagcgcgUUUCGCGCg -3'
miRNA:   3'- -CGUUGCCcCAUGCGaaa------AAAGUGCGg -5'
25939 5' -48.3 NC_005337.1 + 7059 0.71 0.967887
Target:  5'- gGCGGCGGGGUugcGCGCguagacgugcaGCGCg -3'
miRNA:   3'- -CGUUGCCCCA---UGCGaaaaaag----UGCGg -5'
25939 5' -48.3 NC_005337.1 + 7835 0.7 0.980687
Target:  5'- aGCGcGCGGuGGUacACGCgcacg-CGCGCCg -3'
miRNA:   3'- -CGU-UGCC-CCA--UGCGaaaaaaGUGCGG- -5'
25939 5' -48.3 NC_005337.1 + 8293 0.84 0.402484
Target:  5'- uGCAGCGGGGUcugcagccGCGCguuccgcgcgUUCACGCCc -3'
miRNA:   3'- -CGUUGCCCCA--------UGCGaaaa------AAGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.