miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25942 5' -63 NC_005337.1 + 100223 0.66 0.570196
Target:  5'- -cCGGCGCCGCGugcgcgugaucGCGGuCCCGccCGc -3'
miRNA:   3'- cuGCCGCGGCGC-----------CGCCuGGGCaaGCu -5'
25942 5' -63 NC_005337.1 + 71322 0.66 0.579838
Target:  5'- cGGCGGCGaCCcgcgcgGCGGCGGugCacaacaUCGAg -3'
miRNA:   3'- -CUGCCGC-GG------CGCCGCCugGgca---AGCU- -5'
25942 5' -63 NC_005337.1 + 82148 0.66 0.570196
Target:  5'- uGGCGGCGCacacgGUGGCGG-CCaCGUcCGu -3'
miRNA:   3'- -CUGCCGCGg----CGCCGCCuGG-GCAaGCu -5'
25942 5' -63 NC_005337.1 + 45224 0.66 0.567311
Target:  5'- cGCGGCGgaCGCGGCcuucgagcucgucgGGACgCCGUaCGGg -3'
miRNA:   3'- cUGCCGCg-GCGCCG--------------CCUG-GGCAaGCU- -5'
25942 5' -63 NC_005337.1 + 43844 0.66 0.570196
Target:  5'- -cCGGCGgCGCGGUGGAgaUCGUguacugCGAc -3'
miRNA:   3'- cuGCCGCgGCGCCGCCUg-GGCAa-----GCU- -5'
25942 5' -63 NC_005337.1 + 1184 0.66 0.599217
Target:  5'- aGGCGGUGCgcgagCGCGGCacGGGCgCGcauUUCGAc -3'
miRNA:   3'- -CUGCCGCG-----GCGCCG--CCUGgGC---AAGCU- -5'
25942 5' -63 NC_005337.1 + 35636 0.66 0.593392
Target:  5'- uGACGagcaucaggagggucGCGCCGaCGGCGGuCCCGa---- -3'
miRNA:   3'- -CUGC---------------CGCGGC-GCCGCCuGGGCaagcu -5'
25942 5' -63 NC_005337.1 + 29975 0.66 0.599217
Target:  5'- aGCGcCGCCGCGcccucGCGGaccGCCCGcgCGAa -3'
miRNA:   3'- cUGCcGCGGCGC-----CGCC---UGGGCaaGCU- -5'
25942 5' -63 NC_005337.1 + 44392 0.66 0.599217
Target:  5'- gGAUGGgGCCuGUGGCGGACauGaUCGu -3'
miRNA:   3'- -CUGCCgCGG-CGCCGCCUGggCaAGCu -5'
25942 5' -63 NC_005337.1 + 44507 0.66 0.589514
Target:  5'- cGACGcgcaacucGCGCuCGCGGCGGAgCUccUCGGc -3'
miRNA:   3'- -CUGC--------CGCG-GCGCCGCCUgGGcaAGCU- -5'
25942 5' -63 NC_005337.1 + 15477 0.66 0.579838
Target:  5'- cGACGGCGCgCGCGGCacgacGGCgCCGccgcCGGc -3'
miRNA:   3'- -CUGCCGCG-GCGCCGc----CUG-GGCaa--GCU- -5'
25942 5' -63 NC_005337.1 + 20964 0.66 0.570196
Target:  5'- gGGCGGC-UCGuCGGCGGACCgGgUCu- -3'
miRNA:   3'- -CUGCCGcGGC-GCCGCCUGGgCaAGcu -5'
25942 5' -63 NC_005337.1 + 929 0.66 0.599217
Target:  5'- cGGCGGCGagGCGGCGGAgCgCGgaCa- -3'
miRNA:   3'- -CUGCCGCggCGCCGCCUgG-GCaaGcu -5'
25942 5' -63 NC_005337.1 + 83914 0.66 0.599217
Target:  5'- gGGCGGCGCCuGCuGGCccaGGCUCGgcCGGg -3'
miRNA:   3'- -CUGCCGCGG-CG-CCGc--CUGGGCaaGCU- -5'
25942 5' -63 NC_005337.1 + 110341 0.66 0.560595
Target:  5'- gGGCGGCGUCGCGcGCGccuGCCgCGggCGc -3'
miRNA:   3'- -CUGCCGCGGCGC-CGCc--UGG-GCaaGCu -5'
25942 5' -63 NC_005337.1 + 45738 0.66 0.589514
Target:  5'- uGACGGCGCCGUcuaGCacGGCCCcgcGUUCGu -3'
miRNA:   3'- -CUGCCGCGGCGc--CGc-CUGGG---CAAGCu -5'
25942 5' -63 NC_005337.1 + 91904 0.66 0.583705
Target:  5'- cGACGGuCGCCGggaugagguacgaguUGGCGGACuuGUcCa- -3'
miRNA:   3'- -CUGCC-GCGGC---------------GCCGCCUGggCAaGcu -5'
25942 5' -63 NC_005337.1 + 66081 0.66 0.570196
Target:  5'- cGCGGcCGCgGCGGCGGagGCgCUGUgCGGc -3'
miRNA:   3'- cUGCC-GCGgCGCCGCC--UG-GGCAaGCU- -5'
25942 5' -63 NC_005337.1 + 29182 0.66 0.579838
Target:  5'- -cCGGagaCGCGGCGGcGCCCGUgcCGAa -3'
miRNA:   3'- cuGCCgcgGCGCCGCC-UGGGCAa-GCU- -5'
25942 5' -63 NC_005337.1 + 109171 0.66 0.570196
Target:  5'- cGCGcGCGCCGCgccgcgcgGGCGGAgCUCGgcgUCGc -3'
miRNA:   3'- cUGC-CGCGGCG--------CCGCCU-GGGCa--AGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.