miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25942 5' -63 NC_005337.1 + 816 0.69 0.424488
Target:  5'- cGCGGaGCCguccgcGCGcGCGGGCCCGggcUCGAc -3'
miRNA:   3'- cUGCCgCGG------CGC-CGCCUGGGCa--AGCU- -5'
25942 5' -63 NC_005337.1 + 121940 0.7 0.360393
Target:  5'- gGACGGCGCUGCaccaccacGCGGACuccuuCCGggCGAa -3'
miRNA:   3'- -CUGCCGCGGCGc-------CGCCUG-----GGCaaGCU- -5'
25942 5' -63 NC_005337.1 + 42974 0.7 0.383625
Target:  5'- gGACGGCGCgGCGaCGGGCCagacgUUGAa -3'
miRNA:   3'- -CUGCCGCGgCGCcGCCUGGgca--AGCU- -5'
25942 5' -63 NC_005337.1 + 37642 0.69 0.399656
Target:  5'- --aGGCGCCGCGGuCGGGCUUcaccgCGAu -3'
miRNA:   3'- cugCCGCGGCGCC-GCCUGGGcaa--GCU- -5'
25942 5' -63 NC_005337.1 + 119849 0.69 0.399656
Target:  5'- -cCGGCGCCaGCGGCGGcACgUCGcgCGGc -3'
miRNA:   3'- cuGCCGCGG-CGCCGCC-UG-GGCaaGCU- -5'
25942 5' -63 NC_005337.1 + 4048 0.69 0.40783
Target:  5'- aGCGGCGUCuuguCGaGCGGGCCCGUguagUUGAc -3'
miRNA:   3'- cUGCCGCGGc---GC-CGCCUGGGCA----AGCU- -5'
25942 5' -63 NC_005337.1 + 65672 0.69 0.416108
Target:  5'- -gUGGUGCCcaGCGGCGaGACCC--UCGAc -3'
miRNA:   3'- cuGCCGCGG--CGCCGC-CUGGGcaAGCU- -5'
25942 5' -63 NC_005337.1 + 69724 0.69 0.416108
Target:  5'- aGCGGCuCCuGCGGCacGGugCCGggCGAg -3'
miRNA:   3'- cUGCCGcGG-CGCCG--CCugGGCaaGCU- -5'
25942 5' -63 NC_005337.1 + 110209 0.69 0.416108
Target:  5'- uGAUGGCgGCCGCGGCcGcGGCCgCGUcgccCGAg -3'
miRNA:   3'- -CUGCCG-CGGCGCCG-C-CUGG-GCAa---GCU- -5'
25942 5' -63 NC_005337.1 + 64911 0.7 0.34546
Target:  5'- -cUGGCGCUaGCGGCcGGCCCGcgCGGg -3'
miRNA:   3'- cuGCCGCGG-CGCCGcCUGGGCaaGCU- -5'
25942 5' -63 NC_005337.1 + 22129 0.71 0.300701
Target:  5'- cGGCGGCGaguaCGCGGacaacgaccgccaGGACCUGUUCa- -3'
miRNA:   3'- -CUGCCGCg---GCGCCg------------CCUGGGCAAGcu -5'
25942 5' -63 NC_005337.1 + 16650 0.72 0.283839
Target:  5'- cGGCGGUGaCGCGGCGG-CCgGU-CGAg -3'
miRNA:   3'- -CUGCCGCgGCGCCGCCuGGgCAaGCU- -5'
25942 5' -63 NC_005337.1 + 64247 0.8 0.086819
Target:  5'- uGCGGCGCUGCGGCggcucugGGACCCGggCGc -3'
miRNA:   3'- cUGCCGCGGCGCCG-------CCUGGGCaaGCu -5'
25942 5' -63 NC_005337.1 + 49362 0.77 0.129927
Target:  5'- uGCGGCGCgUGCGGCGGcuaCUGUUCGAc -3'
miRNA:   3'- cUGCCGCG-GCGCCGCCug-GGCAAGCU- -5'
25942 5' -63 NC_005337.1 + 68203 0.77 0.129927
Target:  5'- cGGgGGCGCCGCuGCGGGCCCGccUGAc -3'
miRNA:   3'- -CUgCCGCGGCGcCGCCUGGGCaaGCU- -5'
25942 5' -63 NC_005337.1 + 95621 0.75 0.169982
Target:  5'- uGGCGGCGuCCGUGggcGCGGGCCCGcUCGc -3'
miRNA:   3'- -CUGCCGC-GGCGC---CGCCUGGGCaAGCu -5'
25942 5' -63 NC_005337.1 + 6508 0.75 0.17581
Target:  5'- cGGCGGCuuccgcucgagcaggGCCGCGGCGGACuuGaagUCGu -3'
miRNA:   3'- -CUGCCG---------------CGGCGCCGCCUGggCa--AGCu -5'
25942 5' -63 NC_005337.1 + 29735 0.75 0.187104
Target:  5'- cGCGGUGuuGCGGCGGACCag--CGGg -3'
miRNA:   3'- cUGCCGCggCGCCGCCUGGgcaaGCU- -5'
25942 5' -63 NC_005337.1 + 77399 0.73 0.231242
Target:  5'- -cCGGCGCCGCGggagguggauguGCGGGCCCag-CGAg -3'
miRNA:   3'- cuGCCGCGGCGC------------CGCCUGGGcaaGCU- -5'
25942 5' -63 NC_005337.1 + 40543 0.73 0.247798
Target:  5'- cGCGGCG-CGCGGUGGugCgGUucUCGAg -3'
miRNA:   3'- cUGCCGCgGCGCCGCCugGgCA--AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.