Results 1 - 20 of 145 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25942 | 5' | -63 | NC_005337.1 | + | 118168 | 1.08 | 0.000856 |
Target: 5'- uGACGGCGCCGCGGCGGACCCGUUCGAg -3' miRNA: 3'- -CUGCCGCGGCGCCGCCUGGGCAAGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 64247 | 0.8 | 0.086819 |
Target: 5'- uGCGGCGCUGCGGCggcucugGGACCCGggCGc -3' miRNA: 3'- cUGCCGCGGCGCCG-------CCUGGGCaaGCu -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 49362 | 0.77 | 0.129927 |
Target: 5'- uGCGGCGCgUGCGGCGGcuaCUGUUCGAc -3' miRNA: 3'- cUGCCGCG-GCGCCGCCug-GGCAAGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 68203 | 0.77 | 0.129927 |
Target: 5'- cGGgGGCGCCGCuGCGGGCCCGccUGAc -3' miRNA: 3'- -CUgCCGCGGCGcCGCCUGGGCaaGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 25390 | 0.76 | 0.165926 |
Target: 5'- --gGGCGCCGCGGUGGcgGCCUcggaGUUCGGg -3' miRNA: 3'- cugCCGCGGCGCCGCC--UGGG----CAAGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 2190 | 0.75 | 0.169982 |
Target: 5'- cACGGCGCagGCGGCGGACgCGggCGc -3' miRNA: 3'- cUGCCGCGg-CGCCGCCUGgGCaaGCu -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 95621 | 0.75 | 0.169982 |
Target: 5'- uGGCGGCGuCCGUGggcGCGGGCCCGcUCGc -3' miRNA: 3'- -CUGCCGC-GGCGC---CGCCUGGGCaAGCu -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 6508 | 0.75 | 0.17581 |
Target: 5'- cGGCGGCuuccgcucgagcaggGCCGCGGCGGACuuGaagUCGu -3' miRNA: 3'- -CUGCCG---------------CGGCGCCGCCUGggCa--AGCu -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 119037 | 0.75 | 0.178361 |
Target: 5'- -cCGGCGCCGCca-GGACCgGUUCGAc -3' miRNA: 3'- cuGCCGCGGCGccgCCUGGgCAAGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 60156 | 0.75 | 0.187104 |
Target: 5'- cACGGCGCCGuuGCGGACCaggcaGUacuUCGAc -3' miRNA: 3'- cUGCCGCGGCgcCGCCUGGg----CA---AGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 29735 | 0.75 | 0.187104 |
Target: 5'- cGCGGUGuuGCGGCGGACCag--CGGg -3' miRNA: 3'- cUGCCGCggCGCCGCCUGGgcaaGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 77399 | 0.73 | 0.231242 |
Target: 5'- -cCGGCGCCGCGggagguggauguGCGGGCCCag-CGAg -3' miRNA: 3'- cuGCCGCGGCGC------------CGCCUGGGcaaGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 40543 | 0.73 | 0.247798 |
Target: 5'- cGCGGCG-CGCGGUGGugCgGUucUCGAg -3' miRNA: 3'- cUGCCGCgGCGCCGCCugGgCA--AGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 66059 | 0.73 | 0.247798 |
Target: 5'- -cCGGaCGCCGUcaGGCGGGCCCGcagCGGc -3' miRNA: 3'- cuGCC-GCGGCG--CCGCCUGGGCaa-GCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 117820 | 0.72 | 0.265323 |
Target: 5'- -gUGGCGCC-CGG-GGACCCGggCGGg -3' miRNA: 3'- cuGCCGCGGcGCCgCCUGGGCaaGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 35038 | 0.72 | 0.271384 |
Target: 5'- cGCGGCGagcgCGUGGUGGACCgCGU-CGAa -3' miRNA: 3'- cUGCCGCg---GCGCCGCCUGG-GCAaGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 16650 | 0.72 | 0.283839 |
Target: 5'- cGGCGGUGaCGCGGCGG-CCgGU-CGAg -3' miRNA: 3'- -CUGCCGCgGCGCCGCCuGGgCAaGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 93745 | 0.72 | 0.290234 |
Target: 5'- -cCGcGCGCCGCGGCGGcugcaugccgcACCuCGUcuUCGAu -3' miRNA: 3'- cuGC-CGCGGCGCCGCC-----------UGG-GCA--AGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 99680 | 0.72 | 0.296742 |
Target: 5'- cGCGGCcugGgCGUGGUGGACCCGgcgaccUUCGAg -3' miRNA: 3'- cUGCCG---CgGCGCCGCCUGGGC------AAGCU- -5' |
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25942 | 5' | -63 | NC_005337.1 | + | 22129 | 0.71 | 0.300701 |
Target: 5'- cGGCGGCGaguaCGCGGacaacgaccgccaGGACCUGUUCa- -3' miRNA: 3'- -CUGCCGCg---GCGCCg------------CCUGGGCAAGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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