miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25942 5' -63 NC_005337.1 + 816 0.69 0.424488
Target:  5'- cGCGGaGCCguccgcGCGcGCGGGCCCGggcUCGAc -3'
miRNA:   3'- cUGCCgCGG------CGC-CGCCUGGGCa--AGCU- -5'
25942 5' -63 NC_005337.1 + 816 0.69 0.424488
Target:  5'- cGCGGaGCCguccgcGCGcGCGGGCCCGggcUCGAc -3'
miRNA:   3'- cUGCCgCGG------CGC-CGCCUGGGCa--AGCU- -5'
25942 5' -63 NC_005337.1 + 929 0.66 0.599217
Target:  5'- cGGCGGCGagGCGGCGGAgCgCGgaCa- -3'
miRNA:   3'- -CUGCCGCggCGCCGCCUgG-GCaaGcu -5'
25942 5' -63 NC_005337.1 + 929 0.66 0.599217
Target:  5'- cGGCGGCGagGCGGCGGAgCgCGgaCa- -3'
miRNA:   3'- -CUGCCGCggCGCCGCCUgG-GCaaGcu -5'
25942 5' -63 NC_005337.1 + 965 0.68 0.476785
Target:  5'- cGGCGGgGCUggaGCGGCGGGgCUGgcgCGGc -3'
miRNA:   3'- -CUGCCgCGG---CGCCGCCUgGGCaa-GCU- -5'
25942 5' -63 NC_005337.1 + 965 0.68 0.476785
Target:  5'- cGGCGGgGCUggaGCGGCGGGgCUGgcgCGGc -3'
miRNA:   3'- -CUGCCgCGG---CGCCGCCUgGGCaa-GCU- -5'
25942 5' -63 NC_005337.1 + 1184 0.66 0.599217
Target:  5'- aGGCGGUGCgcgagCGCGGCacGGGCgCGcauUUCGAc -3'
miRNA:   3'- -CUGCCGCG-----GCGCCG--CCUGgGC---AAGCU- -5'
25942 5' -63 NC_005337.1 + 1443 0.67 0.513363
Target:  5'- cGGCGGCGCCGagGuGCGcGACCaCGUaCGc -3'
miRNA:   3'- -CUGCCGCGGCg-C-CGC-CUGG-GCAaGCu -5'
25942 5' -63 NC_005337.1 + 2190 0.75 0.169982
Target:  5'- cACGGCGCagGCGGCGGACgCGggCGc -3'
miRNA:   3'- cUGCCGCGg-CGCCGCCUGgGCaaGCu -5'
25942 5' -63 NC_005337.1 + 3267 0.67 0.504105
Target:  5'- uGCGGUG-CGCGGCGG-CCaCGUgcagCGGc -3'
miRNA:   3'- cUGCCGCgGCGCCGCCuGG-GCAa---GCU- -5'
25942 5' -63 NC_005337.1 + 4048 0.69 0.40783
Target:  5'- aGCGGCGUCuuguCGaGCGGGCCCGUguagUUGAc -3'
miRNA:   3'- cUGCCGCGGc---GC-CGCCUGGGCA----AGCU- -5'
25942 5' -63 NC_005337.1 + 4133 0.66 0.589514
Target:  5'- cGCGaGCGCCaGCGcGCGcGACCaCGUacgCGAc -3'
miRNA:   3'- cUGC-CGCGG-CGC-CGC-CUGG-GCAa--GCU- -5'
25942 5' -63 NC_005337.1 + 6474 0.66 0.618685
Target:  5'- uGGCGGUGaCCaGCGcGCGGACgaGgaggUCGAu -3'
miRNA:   3'- -CUGCCGC-GG-CGC-CGCCUGggCa---AGCU- -5'
25942 5' -63 NC_005337.1 + 6508 0.75 0.17581
Target:  5'- cGGCGGCuuccgcucgagcaggGCCGCGGCGGACuuGaagUCGu -3'
miRNA:   3'- -CUGCCG---------------CGGCGCCGCCUGggCa--AGCu -5'
25942 5' -63 NC_005337.1 + 10262 0.66 0.578872
Target:  5'- --gGGCGCCuccaucgGCGGCGG-CgCGUUCa- -3'
miRNA:   3'- cugCCGCGG-------CGCCGCCuGgGCAAGcu -5'
25942 5' -63 NC_005337.1 + 11921 0.66 0.618685
Target:  5'- -gUGGCGuCCGauGCGGcACCCGggCGc -3'
miRNA:   3'- cuGCCGC-GGCgcCGCC-UGGGCaaGCu -5'
25942 5' -63 NC_005337.1 + 14906 0.66 0.61771
Target:  5'- cGCGGCGCCGaUGGUGGAagcagcuCUCGUggUGGc -3'
miRNA:   3'- cUGCCGCGGC-GCCGCCU-------GGGCAa-GCU- -5'
25942 5' -63 NC_005337.1 + 15477 0.66 0.579838
Target:  5'- cGACGGCGCgCGCGGCacgacGGCgCCGccgcCGGc -3'
miRNA:   3'- -CUGCCGCG-GCGCCGc----CUG-GGCaa--GCU- -5'
25942 5' -63 NC_005337.1 + 16118 0.68 0.485813
Target:  5'- cGCGGCGCCGUcaaccuccauGGCGG-CaCCGcacacgUCGAa -3'
miRNA:   3'- cUGCCGCGGCG----------CCGCCuG-GGCa-----AGCU- -5'
25942 5' -63 NC_005337.1 + 16650 0.72 0.283839
Target:  5'- cGGCGGUGaCGCGGCGG-CCgGU-CGAg -3'
miRNA:   3'- -CUGCCGCgGCGCCGCCuGGgCAaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.