miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25951 5' -63.1 NC_005337.1 + 93273 0.66 0.572488
Target:  5'- uGGCGAGgC-CGggggugCGU-CGGCGCCUGg -3'
miRNA:   3'- gCCGCUC-GuGCa-----GCAcGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 41736 0.66 0.553257
Target:  5'- aGGCGAGCucgcgcaccGCGUCcaUGgGGCGgCCGc -3'
miRNA:   3'- gCCGCUCG---------UGCAGc-ACgCCGCgGGCa -5'
25951 5' -63.1 NC_005337.1 + 38309 0.66 0.553257
Target:  5'- gGGCGcGCGCGUCGaGCGcaacgaccgacGCGUCUGg -3'
miRNA:   3'- gCCGCuCGUGCAGCaCGC-----------CGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 96173 0.66 0.582165
Target:  5'- aGGagccCGAGCACGauguacaugagCGUgGUGGCGCCCa- -3'
miRNA:   3'- gCC----GCUCGUGCa----------GCA-CGCCGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 127783 0.66 0.572488
Target:  5'- ---gGAGCGCGUgGUGCGgGUGCUgGUg -3'
miRNA:   3'- gccgCUCGUGCAgCACGC-CGCGGgCA- -5'
25951 5' -63.1 NC_005337.1 + 122911 0.66 0.572488
Target:  5'- uGGCGAGCGCGcUCGaG-GGCGCgaugcugaacCCGg -3'
miRNA:   3'- gCCGCUCGUGC-AGCaCgCCGCG----------GGCa -5'
25951 5' -63.1 NC_005337.1 + 39652 0.66 0.582165
Target:  5'- gCGGCGcGGC-CG-CGUGgGGCGCgUGg -3'
miRNA:   3'- -GCCGC-UCGuGCaGCACgCCGCGgGCa -5'
25951 5' -63.1 NC_005337.1 + 15706 0.66 0.601609
Target:  5'- aCGaCGuGCcggACGUCGUGCGaGCGCgCGa -3'
miRNA:   3'- -GCcGCuCG---UGCAGCACGC-CGCGgGCa -5'
25951 5' -63.1 NC_005337.1 + 94843 0.66 0.562851
Target:  5'- --cCGAGCGCGgccCGaGCgGGCGCCCGc -3'
miRNA:   3'- gccGCUCGUGCa--GCaCG-CCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 988 0.66 0.601609
Target:  5'- uGGCGcGGCGCG-CGgaggGCGGgcguCGCCUGg -3'
miRNA:   3'- gCCGC-UCGUGCaGCa---CGCC----GCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 133053 0.66 0.601609
Target:  5'- gGGCccgaucuccgaGAGCGCGUgGUcgaaauGC-GCGCCCGUg -3'
miRNA:   3'- gCCG-----------CUCGUGCAgCA------CGcCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 83901 0.66 0.572488
Target:  5'- cCGcCGGGUACGggg-GCGGCGCCUGc -3'
miRNA:   3'- -GCcGCUCGUGCagcaCGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 31052 0.66 0.562851
Target:  5'- gCGGCGAcGCAUGUCcaGCacgaaGGCGUCCa- -3'
miRNA:   3'- -GCCGCU-CGUGCAGcaCG-----CCGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 50177 0.66 0.579258
Target:  5'- aCGGCGAccgcgcccguguccGCGC-UC-UGCGGCGCgCGUc -3'
miRNA:   3'- -GCCGCU--------------CGUGcAGcACGCCGCGgGCA- -5'
25951 5' -63.1 NC_005337.1 + 69038 0.66 0.595765
Target:  5'- uGGCGugcaggGGUACGcCGgguacgaccuggacGCGGUGCCCGg -3'
miRNA:   3'- gCCGC------UCGUGCaGCa-------------CGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 91467 0.66 0.562851
Target:  5'- gGGCGAGCACGauccCGUgcuucGCGGCGgacucagguauCUCGUa -3'
miRNA:   3'- gCCGCUCGUGCa---GCA-----CGCCGC-----------GGGCA- -5'
25951 5' -63.1 NC_005337.1 + 2069 0.66 0.553257
Target:  5'- aGGCGAGCGUGUCc-GCGagcGCGCUCGa -3'
miRNA:   3'- gCCGCUCGUGCAGcaCGC---CGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 63926 0.66 0.572488
Target:  5'- gCGGCGGcGCAcCGcCGUGCGGaaCGCCg-- -3'
miRNA:   3'- -GCCGCU-CGU-GCaGCACGCC--GCGGgca -5'
25951 5' -63.1 NC_005337.1 + 40487 0.66 0.601609
Target:  5'- -cGCGAcCACGUCGUaGCG-CGUCCGg -3'
miRNA:   3'- gcCGCUcGUGCAGCA-CGCcGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 104304 0.66 0.553257
Target:  5'- -cGCGAGgGCG-CG-GCGGCGCUCu- -3'
miRNA:   3'- gcCGCUCgUGCaGCaCGCCGCGGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.