miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25951 5' -63.1 NC_005337.1 + 76233 0.7 0.377169
Target:  5'- uGGCGAGCACGccgcCGUcgaagagcGCGGCcuggccgagcacGCCCGg -3'
miRNA:   3'- gCCGCUCGUGCa---GCA--------CGCCG------------CGGGCa -5'
25951 5' -63.1 NC_005337.1 + 70093 0.7 0.332137
Target:  5'- aGcGCGAGCGCGau-UGCGGCGCCagCGUg -3'
miRNA:   3'- gC-CGCUCGUGCagcACGCCGCGG--GCA- -5'
25951 5' -63.1 NC_005337.1 + 71160 0.7 0.332137
Target:  5'- --cCGAGCccuGCaUCGUGgGGCGCCCGUg -3'
miRNA:   3'- gccGCUCG---UGcAGCACgCCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 124260 0.7 0.332137
Target:  5'- cCGGgauCGAGCACGaCGacgGCGGCGCCgGc -3'
miRNA:   3'- -GCC---GCUCGUGCaGCa--CGCCGCGGgCa -5'
25951 5' -63.1 NC_005337.1 + 122396 0.7 0.354148
Target:  5'- aGGuCGugcuGCGCGgcggCGcGCGGCGCCUGUc -3'
miRNA:   3'- gCC-GCu---CGUGCa---GCaCGCCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 66091 0.7 0.354148
Target:  5'- gCGGCGgaGGCGC--UGUGCGGCGUCUGc -3'
miRNA:   3'- -GCCGC--UCGUGcaGCACGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 95035 0.7 0.36171
Target:  5'- aCGGCGGGCaggaacgccugcGCGUUGUcGCGcaCGCCCGg -3'
miRNA:   3'- -GCCGCUCG------------UGCAGCA-CGCc-GCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 1295 0.7 0.376385
Target:  5'- uCGGCGGGCAgGUUGUccauccgGCGGCGCa--- -3'
miRNA:   3'- -GCCGCUCGUgCAGCA-------CGCCGCGggca -5'
25951 5' -63.1 NC_005337.1 + 66500 0.7 0.377169
Target:  5'- uGGCGAGCG---UG-GUGGUGCCCGUg -3'
miRNA:   3'- gCCGCUCGUgcaGCaCGCCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 108851 0.71 0.311147
Target:  5'- gGGCGAcacGC-CGUCGUGCGaGCGgaaCCCGa -3'
miRNA:   3'- gCCGCU---CGuGCAGCACGC-CGC---GGGCa -5'
25951 5' -63.1 NC_005337.1 + 7039 0.71 0.304379
Target:  5'- aGGcCGAGCACGUCGgggcggGCGGCgggguugcGCgCGUa -3'
miRNA:   3'- gCC-GCUCGUGCAGCa-----CGCCG--------CGgGCA- -5'
25951 5' -63.1 NC_005337.1 + 1154 0.71 0.297724
Target:  5'- gCGGgGAGCGCGcCG-GCGGagcgGCCCGc -3'
miRNA:   3'- -GCCgCUCGUGCaGCaCGCCg---CGGGCa -5'
25951 5' -63.1 NC_005337.1 + 42364 0.83 0.045783
Target:  5'- gCGGCGAcGCACGUCGUGacCGGCGaCCCGg -3'
miRNA:   3'- -GCCGCU-CGUGCAGCAC--GCCGC-GGGCa -5'
25951 5' -63.1 NC_005337.1 + 1655 0.78 0.111205
Target:  5'- gCGGCGAcgagcuuggccgccGcCGCGUCGuUGCGGUGCCCGg -3'
miRNA:   3'- -GCCGCU--------------C-GUGCAGC-ACGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 98481 0.76 0.147172
Target:  5'- aGGCagGGGCGCGcCG-GCGGCGUCCGUc -3'
miRNA:   3'- gCCG--CUCGUGCaGCaCGCCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 39944 0.76 0.158369
Target:  5'- gCGGCGGGCGCcUCGcGCgGGCGCUCGa -3'
miRNA:   3'- -GCCGCUCGUGcAGCaCG-CCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 10443 0.74 0.192064
Target:  5'- gCGGCGGugcGCGCGUCGUGCGccaggaccuccGUGUCCGg -3'
miRNA:   3'- -GCCGCU---CGUGCAGCACGC-----------CGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 41300 0.72 0.272233
Target:  5'- aCGGCcAGCGCGUUGUccagcGUGGCGUCCa- -3'
miRNA:   3'- -GCCGcUCGUGCAGCA-----CGCCGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 90938 0.72 0.272233
Target:  5'- cCGGCGgccAGCGCGUCG-GCGaGC-CCCGa -3'
miRNA:   3'- -GCCGC---UCGUGCAGCaCGC-CGcGGGCa -5'
25951 5' -63.1 NC_005337.1 + 123867 0.72 0.278437
Target:  5'- aCGGCGGGCGCGgcgCGUaCGGC-CUCGUc -3'
miRNA:   3'- -GCCGCUCGUGCa--GCAcGCCGcGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.