miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25951 5' -63.1 NC_005337.1 + 724 0.69 0.409392
Target:  5'- gCGGCcgcgGGGUACG-CGggcgagagcGCGGCGCCCGc -3'
miRNA:   3'- -GCCG----CUCGUGCaGCa--------CGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 724 0.69 0.409392
Target:  5'- gCGGCcgcgGGGUACG-CGggcgagagcGCGGCGCCCGc -3'
miRNA:   3'- -GCCG----CUCGUGCaGCa--------CGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 988 0.66 0.601609
Target:  5'- uGGCGcGGCGCG-CGgaggGCGGgcguCGCCUGg -3'
miRNA:   3'- gCCGC-UCGUGCaGCa---CGCC----GCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 988 0.66 0.601609
Target:  5'- uGGCGcGGCGCG-CGgaggGCGGgcguCGCCUGg -3'
miRNA:   3'- gCCGC-UCGUGCaGCa---CGCC----GCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 1154 0.71 0.297724
Target:  5'- gCGGgGAGCGCGcCG-GCGGagcgGCCCGc -3'
miRNA:   3'- -GCCgCUCGUGCaGCaCGCCg---CGGGCa -5'
25951 5' -63.1 NC_005337.1 + 1295 0.7 0.376385
Target:  5'- uCGGCGGGCAgGUUGUccauccgGCGGCGCa--- -3'
miRNA:   3'- -GCCGCUCGUgCAGCA-------CGCCGCGggca -5'
25951 5' -63.1 NC_005337.1 + 1655 0.78 0.111205
Target:  5'- gCGGCGAcgagcuuggccgccGcCGCGUCGuUGCGGUGCCCGg -3'
miRNA:   3'- -GCCGCU--------------C-GUGCAGC-ACGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 1716 0.67 0.538012
Target:  5'- aGGCGccguaccgcacguucAGCGCGUCGaUGUccaGGCccGCCCGg -3'
miRNA:   3'- gCCGC---------------UCGUGCAGC-ACG---CCG--CGGGCa -5'
25951 5' -63.1 NC_005337.1 + 2069 0.66 0.553257
Target:  5'- aGGCGAGCGUGUCc-GCGagcGCGCUCGa -3'
miRNA:   3'- gCCGCUCGUGCAGcaCGC---CGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 2373 0.67 0.534223
Target:  5'- cCGGuCGAcCGCGUccaCGUGC-GCGCCCGc -3'
miRNA:   3'- -GCC-GCUcGUGCA---GCACGcCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 2624 0.66 0.570557
Target:  5'- gCGGCGcGCACGggcuccucgaagCGgaagGUGGCGCCgGc -3'
miRNA:   3'- -GCCGCuCGUGCa-----------GCa---CGCCGCGGgCa -5'
25951 5' -63.1 NC_005337.1 + 3245 0.67 0.495984
Target:  5'- aGGCGcGCGCacgccuuGUCGuUGCGGUGCgCGg -3'
miRNA:   3'- gCCGCuCGUG-------CAGC-ACGCCGCGgGCa -5'
25951 5' -63.1 NC_005337.1 + 5992 0.7 0.369384
Target:  5'- aGGCGcGCGCGUugcagaccgccgCGUgcaGCGGCGUCCGc -3'
miRNA:   3'- gCCGCuCGUGCA------------GCA---CGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 7039 0.71 0.304379
Target:  5'- aGGcCGAGCACGUCGgggcggGCGGCgggguugcGCgCGUa -3'
miRNA:   3'- gCC-GCUCGUGCAGCa-----CGCCG--------CGgGCA- -5'
25951 5' -63.1 NC_005337.1 + 8164 0.72 0.284753
Target:  5'- aCGGCGuGCGCGUaguUGUGGCGCaCCa- -3'
miRNA:   3'- -GCCGCuCGUGCAgc-ACGCCGCG-GGca -5'
25951 5' -63.1 NC_005337.1 + 10443 0.74 0.192064
Target:  5'- gCGGCGGugcGCGCGUCGUGCGccaggaccuccGUGUCCGg -3'
miRNA:   3'- -GCCGCU---CGUGCAGCACGC-----------CGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 10674 0.72 0.266141
Target:  5'- -cGCGAGCGCGgcaCGUGCGGCcgcaGCUCGc -3'
miRNA:   3'- gcCGCUCGUGCa--GCACGCCG----CGGGCa -5'
25951 5' -63.1 NC_005337.1 + 12044 0.67 0.506128
Target:  5'- uCGGCGuGCG-GUCGUccgGCGuGCGCgCCGa -3'
miRNA:   3'- -GCCGCuCGUgCAGCA---CGC-CGCG-GGCa -5'
25951 5' -63.1 NC_005337.1 + 12445 0.66 0.601609
Target:  5'- --aCGAGCACGUCG-GcCGGCGUcauaCCGa -3'
miRNA:   3'- gccGCUCGUGCAGCaC-GCCGCG----GGCa -5'
25951 5' -63.1 NC_005337.1 + 12695 0.67 0.534223
Target:  5'- cCGGC--GCGCGUacaUGCGGUGCUCGg -3'
miRNA:   3'- -GCCGcuCGUGCAgc-ACGCCGCGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.