miRNA display CGI


Results 1 - 20 of 154 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25951 5' -63.1 NC_005337.1 + 123118 1.06 0.000966
Target:  5'- aCGGCGAGCACGUCGUGCGGCGCCCGUc -3'
miRNA:   3'- -GCCGCUCGUGCAGCACGCCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 42364 0.83 0.045783
Target:  5'- gCGGCGAcGCACGUCGUGacCGGCGaCCCGg -3'
miRNA:   3'- -GCCGCU-CGUGCAGCAC--GCCGC-GGGCa -5'
25951 5' -63.1 NC_005337.1 + 1655 0.78 0.111205
Target:  5'- gCGGCGAcgagcuuggccgccGcCGCGUCGuUGCGGUGCCCGg -3'
miRNA:   3'- -GCCGCU--------------C-GUGCAGC-ACGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 43072 0.76 0.14325
Target:  5'- cCGGCG-GCGCGccCGUccgcaucGCGGCGCCCGg -3'
miRNA:   3'- -GCCGCuCGUGCa-GCA-------CGCCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 98481 0.76 0.147172
Target:  5'- aGGCagGGGCGCGcCG-GCGGCGUCCGUc -3'
miRNA:   3'- gCCG--CUCGUGCaGCaCGCCGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 39944 0.76 0.158369
Target:  5'- gCGGCGGGCGCcUCGcGCgGGCGCUCGa -3'
miRNA:   3'- -GCCGCUCGUGcAGCaCG-CCGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 34734 0.75 0.162269
Target:  5'- uCGcGCGAGCA-GUCG-GCGGCGCaCCGg -3'
miRNA:   3'- -GC-CGCUCGUgCAGCaCGCCGCG-GGCa -5'
25951 5' -63.1 NC_005337.1 + 88232 0.75 0.162269
Target:  5'- aGGCGGGCugcugcgaagACGUCGUGCgugccGGCGCgCCGg -3'
miRNA:   3'- gCCGCUCG----------UGCAGCACG-----CCGCG-GGCa -5'
25951 5' -63.1 NC_005337.1 + 10443 0.74 0.192064
Target:  5'- gCGGCGGugcGCGCGUCGUGCGccaggaccuccGUGUCCGg -3'
miRNA:   3'- -GCCGCU---CGUGCAGCACGC-----------CGCGGGCa -5'
25951 5' -63.1 NC_005337.1 + 80423 0.74 0.20142
Target:  5'- uGGCGucGCugGUCGUGCccGCGCUCGUc -3'
miRNA:   3'- gCCGCu-CGugCAGCACGc-CGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 66636 0.74 0.216193
Target:  5'- gGGCGGGCGgugggaGUgGUGCGGCGCCg-- -3'
miRNA:   3'- gCCGCUCGUg-----CAgCACGCCGCGGgca -5'
25951 5' -63.1 NC_005337.1 + 118790 0.73 0.22132
Target:  5'- gCGGCG-GCGcCGUCGUGcCGcGCGCgCCGUc -3'
miRNA:   3'- -GCCGCuCGU-GCAGCAC-GC-CGCG-GGCA- -5'
25951 5' -63.1 NC_005337.1 + 87927 0.73 0.22655
Target:  5'- cCGGCGcuucguGCACGcCG-GCGGCaGCCCGg -3'
miRNA:   3'- -GCCGCu-----CGUGCaGCaCGCCG-CGGGCa -5'
25951 5' -63.1 NC_005337.1 + 32532 0.73 0.237325
Target:  5'- aGGUGAGCAg--CGUGCGGCGCaCgGUg -3'
miRNA:   3'- gCCGCUCGUgcaGCACGCCGCG-GgCA- -5'
25951 5' -63.1 NC_005337.1 + 10674 0.72 0.266141
Target:  5'- -cGCGAGCGCGgcaCGUGCGGCcgcaGCUCGc -3'
miRNA:   3'- gcCGCUCGUGCa--GCACGCCG----CGGGCa -5'
25951 5' -63.1 NC_005337.1 + 90938 0.72 0.272233
Target:  5'- cCGGCGgccAGCGCGUCG-GCGaGC-CCCGa -3'
miRNA:   3'- -GCCGC---UCGUGCAGCaCGC-CGcGGGCa -5'
25951 5' -63.1 NC_005337.1 + 41300 0.72 0.272233
Target:  5'- aCGGCcAGCGCGUUGUccagcGUGGCGUCCa- -3'
miRNA:   3'- -GCCGcUCGUGCAGCA-----CGCCGCGGGca -5'
25951 5' -63.1 NC_005337.1 + 123867 0.72 0.278437
Target:  5'- aCGGCGGGCGCGgcgCGUaCGGC-CUCGUc -3'
miRNA:   3'- -GCCGCUCGUGCa--GCAcGCCGcGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 77791 0.72 0.278437
Target:  5'- uGGgGAGCGCGUaCGgcaGCacGCGCCCGUa -3'
miRNA:   3'- gCCgCUCGUGCA-GCa--CGc-CGCGGGCA- -5'
25951 5' -63.1 NC_005337.1 + 25303 0.72 0.278437
Target:  5'- gGGCGGGCcgcGCGUCGacCGGCGCgUGUa -3'
miRNA:   3'- gCCGCUCG---UGCAGCacGCCGCGgGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.