Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25990 | 3' | -52 | NC_005340.1 | + | 24348 | 0.7 | 0.506962 |
Target: 5'- cCCGuGGCGUUAGCGAgcgucuGgUCUGGCa -3' miRNA: 3'- -GGC-CCGUAGUCGUUaaau--UgGGGCCG- -5' |
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25990 | 3' | -52 | NC_005340.1 | + | 16292 | 0.68 | 0.609907 |
Target: 5'- gUGGGCG-CAGUAcgcc-GCCCCGGg -3' miRNA: 3'- gGCCCGUaGUCGUuaaauUGGGGCCg -5' |
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25990 | 3' | -52 | NC_005340.1 | + | 6659 | 0.68 | 0.626264 |
Target: 5'- gCCGGGCGgcacgccggucaaAGCGGguUUUGACCCugacagcgacCGGCg -3' miRNA: 3'- -GGCCCGUag-----------UCGUU--AAAUUGGG----------GCCG- -5' |
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25990 | 3' | -52 | NC_005340.1 | + | 15583 | 0.68 | 0.637957 |
Target: 5'- aCCGG-CAUCAGCGccucaguguucugggAUUUGcagGCaUCCGGCa -3' miRNA: 3'- -GGCCcGUAGUCGU---------------UAAAU---UG-GGGCCG- -5' |
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25990 | 3' | -52 | NC_005340.1 | + | 20081 | 0.67 | 0.691475 |
Target: 5'- aCGGGCAUgAcCA--UUGACgCCGGUg -3' miRNA: 3'- gGCCCGUAgUcGUuaAAUUGgGGCCG- -5' |
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25990 | 3' | -52 | NC_005340.1 | + | 8131 | 0.66 | 0.714391 |
Target: 5'- uCUGGGCGUCAuuGCcg---GGCgCCGGUu -3' miRNA: 3'- -GGCCCGUAGU--CGuuaaaUUGgGGCCG- -5' |
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25990 | 3' | -52 | NC_005340.1 | + | 19017 | 0.66 | 0.72572 |
Target: 5'- -aGGGCAUCaugAGUGcUUUuGCUCCGGUc -3' miRNA: 3'- ggCCCGUAG---UCGUuAAAuUGGGGCCG- -5' |
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25990 | 3' | -52 | NC_005340.1 | + | 16207 | 0.75 | 0.27346 |
Target: 5'- aUGGcGCggCAGCGA-UUGACCUCGGCc -3' miRNA: 3'- gGCC-CGuaGUCGUUaAAUUGGGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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