miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26020 5' -53.3 NC_005342.2 + 30513 0.66 0.836641
Target:  5'- cGCGUuGCG-CCACAUC---CGGCGCc -3'
miRNA:   3'- -CGCAcUGCuGGUGUAGcuuGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 30430 0.66 0.799297
Target:  5'- aUGUGcGCGAUCGCuUCGGACaGUGCGa -3'
miRNA:   3'- cGCAC-UGCUGGUGuAGCUUGcCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 10575 0.66 0.799297
Target:  5'- ---cGACGAgCGgGUCGGGCGcGCGCu -3'
miRNA:   3'- cgcaCUGCUgGUgUAGCUUGC-CGUGc -5'
26020 5' -53.3 NC_005342.2 + 27192 0.66 0.793434
Target:  5'- gGCGUGuCGacguucaggcgcgcaGCCGCGUCGGcgauguccggcaGCGcGCGCGc -3'
miRNA:   3'- -CGCACuGC---------------UGGUGUAGCU------------UGC-CGUGC- -5'
26020 5' -53.3 NC_005342.2 + 19450 0.66 0.786516
Target:  5'- aCGUGAUGggcagccgcGCCGCcgCGAcccgcgcggucgacGCGGCGCu -3'
miRNA:   3'- cGCACUGC---------UGGUGuaGCU--------------UGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 21810 0.66 0.786516
Target:  5'- aGCGUucgaggcauuccucGACGGCaauccCAUCGAauaccgcgacGCGGCGCGc -3'
miRNA:   3'- -CGCA--------------CUGCUGgu---GUAGCU----------UGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 27470 0.66 0.789491
Target:  5'- aGCGUGugcugaACGACCGCcgCGAuccauugcguGCGGUugauguaaGCGa -3'
miRNA:   3'- -CGCAC------UGCUGGUGuaGCU----------UGCCG--------UGC- -5'
26020 5' -53.3 NC_005342.2 + 41617 0.66 0.789491
Target:  5'- cGCGUGAUucugGGCCugAUgGAAcCGGacaGCGa -3'
miRNA:   3'- -CGCACUG----CUGGugUAgCUU-GCCg--UGC- -5'
26020 5' -53.3 NC_005342.2 + 18421 0.66 0.789491
Target:  5'- cGCGau-CGGCgGCGUCGAcaccGCGaGCGCGu -3'
miRNA:   3'- -CGCacuGCUGgUGUAGCU----UGC-CGUGC- -5'
26020 5' -53.3 NC_005342.2 + 43647 0.66 0.808926
Target:  5'- -aGUGAaucUGcACgACAUCGuacGCGGCGCGa -3'
miRNA:   3'- cgCACU---GC-UGgUGUAGCu--UGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 21284 0.66 0.808926
Target:  5'- --cUGGCGACCugAcgcuaUCGGcagcCGGCGCGa -3'
miRNA:   3'- cgcACUGCUGGugU-----AGCUu---GCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 28871 0.66 0.808926
Target:  5'- uCGUGACGGUCACA-CGGGCcGCGCc -3'
miRNA:   3'- cGCACUGCUGGUGUaGCUUGcCGUGc -5'
26020 5' -53.3 NC_005342.2 + 21365 0.66 0.836641
Target:  5'- uCGUGAacgcgcCGACCACGUUcAACGaCACGa -3'
miRNA:   3'- cGCACU------GCUGGUGUAGcUUGCcGUGC- -5'
26020 5' -53.3 NC_005342.2 + 32080 0.66 0.827608
Target:  5'- cGUG-GGCGGUCGCAUCGucuacgauGGCGGuCACGg -3'
miRNA:   3'- -CGCaCUGCUGGUGUAGC--------UUGCC-GUGC- -5'
26020 5' -53.3 NC_005342.2 + 10211 0.66 0.827608
Target:  5'- uCGgGGCG-CCAggUAUCGAACGGguCGg -3'
miRNA:   3'- cGCaCUGCuGGU--GUAGCUUGCCguGC- -5'
26020 5' -53.3 NC_005342.2 + 9687 0.66 0.827608
Target:  5'- aGCuGUGucguugccgUGAgCGCGUCGGACGGCAaCGc -3'
miRNA:   3'- -CG-CACu--------GCUgGUGUAGCUUGCCGU-GC- -5'
26020 5' -53.3 NC_005342.2 + 32165 0.66 0.818367
Target:  5'- uGCG-GaACGugCGCAggCGu-CGGCGCGa -3'
miRNA:   3'- -CGCaC-UGCugGUGUa-GCuuGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 24309 0.66 0.818367
Target:  5'- -gGUGGCGuuccGCCGCAaggugaggacuUC-AACGGCGCGu -3'
miRNA:   3'- cgCACUGC----UGGUGU-----------AGcUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 19280 0.66 0.808926
Target:  5'- cGCGUu-CGACCGCGU-GAAcaacgcgugccuCGGCGCGc -3'
miRNA:   3'- -CGCAcuGCUGGUGUAgCUU------------GCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 794 0.66 0.808926
Target:  5'- aGCGgcGACGuagcugcggucGCCugcGCGUCGcuCGGCGCGg -3'
miRNA:   3'- -CGCa-CUGC-----------UGG---UGUAGCuuGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.