miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26020 5' -53.3 NC_005342.2 + 102 0.7 0.562725
Target:  5'- uCGUGACGACgAUgagauaGUCGugauuCGGCGCGa -3'
miRNA:   3'- cGCACUGCUGgUG------UAGCuu---GCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 794 0.66 0.808926
Target:  5'- aGCGgcGACGuagcugcggucGCCugcGCGUCGcuCGGCGCGg -3'
miRNA:   3'- -CGCa-CUGC-----------UGG---UGUAGCuuGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 1999 0.69 0.617799
Target:  5'- aCGUcACGGCCGCGUCGAucacaucgACGcccGCGCGg -3'
miRNA:   3'- cGCAcUGCUGGUGUAGCU--------UGC---CGUGC- -5'
26020 5' -53.3 NC_005342.2 + 2461 0.69 0.662135
Target:  5'- uCGUGACGaucgacGCCGCcUCGAGgucgGGCGCGa -3'
miRNA:   3'- cGCACUGC------UGGUGuAGCUUg---CCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 3202 0.67 0.776495
Target:  5'- aGCGUcuGCGcGCCGCcagcgccacgcgcgGUCGAGCGGC-CGg -3'
miRNA:   3'- -CGCAc-UGC-UGGUG--------------UAGCUUGCCGuGC- -5'
26020 5' -53.3 NC_005342.2 + 3824 0.67 0.738189
Target:  5'- aGCGUGuCGAaCACuucaucuUCGGACgGGCGCa -3'
miRNA:   3'- -CGCACuGCUgGUGu------AGCUUG-CCGUGc -5'
26020 5' -53.3 NC_005342.2 + 5011 0.7 0.562725
Target:  5'- gGCGgccaGGCGGCCggcuguuggccgACGUCGGcGCGGCGCu -3'
miRNA:   3'- -CGCa---CUGCUGG------------UGUAGCU-UGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 6546 0.69 0.628889
Target:  5'- cGCGUacgcGCGAaagcCCGCAUCGccgccACGGCGCGc -3'
miRNA:   3'- -CGCAc---UGCU----GGUGUAGCu----UGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 6643 0.7 0.603403
Target:  5'- aGCGcGugGGCCGCAgugcaaccaggcagUcaaCGAAUGGCGCGu -3'
miRNA:   3'- -CGCaCugCUGGUGU--------------A---GCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 6700 0.66 0.818367
Target:  5'- uGCGUGcaACGugCuCAauUCGAGCGcCACGg -3'
miRNA:   3'- -CGCAC--UGCugGuGU--AGCUUGCcGUGC- -5'
26020 5' -53.3 NC_005342.2 + 6796 0.67 0.769389
Target:  5'- ---cGACGGCCgacucgcccGCGUCGAGCaGCGCc -3'
miRNA:   3'- cgcaCUGCUGG---------UGUAGCUUGcCGUGc -5'
26020 5' -53.3 NC_005342.2 + 7096 0.67 0.759117
Target:  5'- cGCGUcGAacaGACCGCAcugcgUGAGCGGaACGg -3'
miRNA:   3'- -CGCA-CUg--CUGGUGUa----GCUUGCCgUGC- -5'
26020 5' -53.3 NC_005342.2 + 7256 0.72 0.457652
Target:  5'- uCGUcGACGAgCACgaaGUCGAACGGCcCGa -3'
miRNA:   3'- cGCA-CUGCUgGUG---UAGCUUGCCGuGC- -5'
26020 5' -53.3 NC_005342.2 + 7537 0.69 0.639982
Target:  5'- -gGUGACGAUCGCggCGAuCGGguUGg -3'
miRNA:   3'- cgCACUGCUGGUGuaGCUuGCCguGC- -5'
26020 5' -53.3 NC_005342.2 + 8129 0.7 0.578048
Target:  5'- gGUGUGGCGacaggucgGCCGCGUCcaucgcguacucgguGAGCGGCGuCGa -3'
miRNA:   3'- -CGCACUGC--------UGGUGUAG---------------CUUGCCGU-GC- -5'
26020 5' -53.3 NC_005342.2 + 8440 0.85 0.071434
Target:  5'- cGCGUucgGACGGCCACAgcgCGAGCGGCGuCGg -3'
miRNA:   3'- -CGCA---CUGCUGGUGUa--GCUUGCCGU-GC- -5'
26020 5' -53.3 NC_005342.2 + 8589 0.66 0.836641
Target:  5'- cGCGaUGcACGaagccgaugcGCgACGUCGAGCucGGCGCGg -3'
miRNA:   3'- -CGC-AC-UGC----------UGgUGUAGCUUG--CCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 8965 0.66 0.818367
Target:  5'- cGCGgcGGCGACCgACGcgcguUCGcggcuugccaGGCGGCGCGc -3'
miRNA:   3'- -CGCa-CUGCUGG-UGU-----AGC----------UUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 9343 0.68 0.706013
Target:  5'- cCGUGcCGAUCAgCG-CGaAGCGGCGCGg -3'
miRNA:   3'- cGCACuGCUGGU-GUaGC-UUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 9687 0.66 0.827608
Target:  5'- aGCuGUGucguugccgUGAgCGCGUCGGACGGCAaCGc -3'
miRNA:   3'- -CG-CACu--------GCUgGUGUAGCUUGCCGU-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.