miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26020 5' -53.3 NC_005342.2 + 47726 1.12 0.001055
Target:  5'- gGCGUGACGACCACAUCGAACGGCACGg -3'
miRNA:   3'- -CGCACUGCUGGUGUAGCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 8440 0.85 0.071434
Target:  5'- cGCGUucgGACGGCCACAgcgCGAGCGGCGuCGg -3'
miRNA:   3'- -CGCA---CUGCUGGUGUa--GCUUGCCGU-GC- -5'
26020 5' -53.3 NC_005342.2 + 11933 0.79 0.176777
Target:  5'- cGCccGGCGACUAC-UCGGGCGGCGCGu -3'
miRNA:   3'- -CGcaCUGCUGGUGuAGCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 41412 0.79 0.186673
Target:  5'- cGCG-GGCGGCaACuUCGGGCGGCACGg -3'
miRNA:   3'- -CGCaCUGCUGgUGuAGCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 33009 0.78 0.213566
Target:  5'- cGCGUugcGuCGGCCGCAUCGAGCcaaccGGCGCGc -3'
miRNA:   3'- -CGCA---CuGCUGGUGUAGCUUG-----CCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 42652 0.77 0.25016
Target:  5'- gGCGUGACGAUC-CAgcgCGAA-GGCGCGa -3'
miRNA:   3'- -CGCACUGCUGGuGUa--GCUUgCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 22417 0.77 0.25674
Target:  5'- --aUGuCGACCcgcugACAUCGAGCGGCGCGu -3'
miRNA:   3'- cgcACuGCUGG-----UGUAGCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 24846 0.75 0.306804
Target:  5'- cCGUcGGCGGCCGCA-CGAACcGCACGg -3'
miRNA:   3'- cGCA-CUGCUGGUGUaGCUUGcCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 27417 0.75 0.329634
Target:  5'- aGCGgcGCGGCCAUGUuacaggccgccagCGAACGGCGCGg -3'
miRNA:   3'- -CGCacUGCUGGUGUA-------------GCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 38947 0.75 0.330443
Target:  5'- uGCGUGcaaugcuCGACCGCAcccCGAGCGGC-CGg -3'
miRNA:   3'- -CGCACu------GCUGGUGUa--GCUUGCCGuGC- -5'
26020 5' -53.3 NC_005342.2 + 22536 0.75 0.338615
Target:  5'- gGCGUGACGGCUACcgC---CGGCACa -3'
miRNA:   3'- -CGCACUGCUGGUGuaGcuuGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 37137 0.75 0.344423
Target:  5'- uGCGcGGCGugCACGUguacugcggcgugaCGAACGGCGCc -3'
miRNA:   3'- -CGCaCUGCugGUGUA--------------GCUUGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 47635 0.75 0.346934
Target:  5'- aGCGccGACGGgCAUuUCGGGCGGUACGg -3'
miRNA:   3'- -CGCa-CUGCUgGUGuAGCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 35206 0.74 0.355397
Target:  5'- -gGUGAgCGuGCCGCcugCGAGCGGCACGu -3'
miRNA:   3'- cgCACU-GC-UGGUGua-GCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 29554 0.74 0.364005
Target:  5'- cGCGaGGCGuugCGCuUCGGACGGCACGa -3'
miRNA:   3'- -CGCaCUGCug-GUGuAGCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 28485 0.74 0.372756
Target:  5'- cGCGU--CGACCGCgcggGUCGcGGCGGCGCGg -3'
miRNA:   3'- -CGCAcuGCUGGUG----UAGC-UUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 46531 0.74 0.372756
Target:  5'- cCGUGcgcaacacgaACGugCucgGCAUCGAACGGCACa -3'
miRNA:   3'- cGCAC----------UGCugG---UGUAGCUUGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 34099 0.74 0.372756
Target:  5'- cCGUGcCGGCCGacuUCGcGCGGCGCGg -3'
miRNA:   3'- cGCACuGCUGGUgu-AGCuUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 24573 0.74 0.390682
Target:  5'- gGCGUGACcGCCcuguccggACugaCGGGCGGCACGg -3'
miRNA:   3'- -CGCACUGcUGG--------UGua-GCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 12073 0.74 0.390682
Target:  5'- cGCGUGAaagaACC-CGUCGAacuuaccgaGCGGCACGa -3'
miRNA:   3'- -CGCACUgc--UGGuGUAGCU---------UGCCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.