miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26020 5' -53.3 NC_005342.2 + 41412 0.79 0.186673
Target:  5'- cGCG-GGCGGCaACuUCGGGCGGCACGg -3'
miRNA:   3'- -CGCaCUGCUGgUGuAGCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 27583 0.7 0.584643
Target:  5'- -gGUGAUGcCCgACGUCGAauagcGCGGCGCc -3'
miRNA:   3'- cgCACUGCuGG-UGUAGCU-----UGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 28736 0.7 0.584643
Target:  5'- cGCGUG-CGGCCAgCA-CGAugACGaGCGCGa -3'
miRNA:   3'- -CGCACuGCUGGU-GUaGCU--UGC-CGUGC- -5'
26020 5' -53.3 NC_005342.2 + 8589 0.66 0.836641
Target:  5'- cGCGaUGcACGaagccgaugcGCgACGUCGAGCucGGCGCGg -3'
miRNA:   3'- -CGC-AC-UGC----------UGgUGUAGCUUG--CCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 37137 0.75 0.344423
Target:  5'- uGCGcGGCGugCACGUguacugcggcgugaCGAACGGCGCc -3'
miRNA:   3'- -CGCaCUGCugGUGUA--------------GCUUGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 35206 0.74 0.355397
Target:  5'- -gGUGAgCGuGCCGCcugCGAGCGGCACGu -3'
miRNA:   3'- cgCACU-GC-UGGUGua-GCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 28485 0.74 0.372756
Target:  5'- cGCGU--CGACCGCgcggGUCGcGGCGGCGCGg -3'
miRNA:   3'- -CGCAcuGCUGGUG----UAGC-UUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 12073 0.74 0.390682
Target:  5'- cGCGUGAaagaACC-CGUCGAacuuaccgaGCGGCACGa -3'
miRNA:   3'- -CGCACUgc--UGGuGUAGCU---------UGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 38177 0.72 0.487146
Target:  5'- gGCGcGACGcgaugauugcgcuGCCGCaAUgGGACGGCACGc -3'
miRNA:   3'- -CGCaCUGC-------------UGGUG-UAgCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 8129 0.7 0.578048
Target:  5'- gGUGUGGCGacaggucgGCCGCGUCcaucgcguacucgguGAGCGGCGuCGa -3'
miRNA:   3'- -CGCACUGC--------UGGUGUAG---------------CUUGCCGU-GC- -5'
26020 5' -53.3 NC_005342.2 + 5011 0.7 0.562725
Target:  5'- gGCGgccaGGCGGCCggcuguuggccgACGUCGGcGCGGCGCu -3'
miRNA:   3'- -CGCa---CUGCUGG------------UGUAGCU-UGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 13818 0.73 0.437879
Target:  5'- gGCGacgGGCG-CCGCGUCGAGCGcauugaGCGCGc -3'
miRNA:   3'- -CGCa--CUGCuGGUGUAGCUUGC------CGUGC- -5'
26020 5' -53.3 NC_005342.2 + 33009 0.78 0.213566
Target:  5'- cGCGUugcGuCGGCCGCAUCGAGCcaaccGGCGCGc -3'
miRNA:   3'- -CGCA---CuGCUGGUGUAGCUUG-----CCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 102 0.7 0.562725
Target:  5'- uCGUGACGACgAUgagauaGUCGugauuCGGCGCGa -3'
miRNA:   3'- cGCACUGCUGgUG------UAGCuu---GCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 24846 0.75 0.306804
Target:  5'- cCGUcGGCGGCCGCA-CGAACcGCACGg -3'
miRNA:   3'- cGCA-CUGCUGGUGUaGCUUGcCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 13756 0.73 0.437879
Target:  5'- gGCGUGuaguugcucACGuCCACuUCGAACuGGCGCGc -3'
miRNA:   3'- -CGCAC---------UGCuGGUGuAGCUUG-CCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 28076 0.7 0.562725
Target:  5'- uGCGc-GCGAUCugGuucaucgugUCGAGCGGCACGc -3'
miRNA:   3'- -CGCacUGCUGGugU---------AGCUUGCCGUGC- -5'
26020 5' -53.3 NC_005342.2 + 47561 0.7 0.584643
Target:  5'- uCGUGcaGCGcGCCGCcugCGGACGGCGCu -3'
miRNA:   3'- cGCAC--UGC-UGGUGua-GCUUGCCGUGc -5'
26020 5' -53.3 NC_005342.2 + 38947 0.75 0.330443
Target:  5'- uGCGUGcaaugcuCGACCGCAcccCGAGCGGC-CGg -3'
miRNA:   3'- -CGCACu------GCUGGUGUa--GCUUGCCGuGC- -5'
26020 5' -53.3 NC_005342.2 + 46531 0.74 0.372756
Target:  5'- cCGUGcgcaacacgaACGugCucgGCAUCGAACGGCACa -3'
miRNA:   3'- cGCAC----------UGCugG---UGUAGCUUGCCGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.