miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26024 3' -50.5 NC_005342.2 + 38506 0.66 0.926494
Target:  5'- --aGCAGCUCgGCgGCgGUGCGGCGc- -3'
miRNA:   3'- ggaUGUUGAG-CGaCGgCAUGUUGCuc -5'
26024 3' -50.5 NC_005342.2 + 2375 0.66 0.926494
Target:  5'- gCCgGCGG-UCGCcuggucGCCGUACAGCGGc -3'
miRNA:   3'- -GGaUGUUgAGCGa-----CGGCAUGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 28734 0.66 0.925897
Target:  5'- cCCgUAUuGCUCGagcGCCGUGCGgaacgccGCGAGa -3'
miRNA:   3'- -GG-AUGuUGAGCga-CGGCAUGU-------UGCUC- -5'
26024 3' -50.5 NC_005342.2 + 20267 0.66 0.920394
Target:  5'- aCCUACGACgucUCGCUGCagcgcguucagGUGC-GCGAc -3'
miRNA:   3'- -GGAUGUUG---AGCGACGg----------CAUGuUGCUc -5'
26024 3' -50.5 NC_005342.2 + 1204 0.66 0.920394
Target:  5'- uCCUGCAGUUCGCcgaUGCUGUugAAuuCGAa -3'
miRNA:   3'- -GGAUGUUGAGCG---ACGGCAugUU--GCUc -5'
26024 3' -50.5 NC_005342.2 + 27053 0.66 0.920394
Target:  5'- aCCU-CGACgggCGUUGCCGUAUGgauuucGCGGa -3'
miRNA:   3'- -GGAuGUUGa--GCGACGGCAUGU------UGCUc -5'
26024 3' -50.5 NC_005342.2 + 35561 0.66 0.913998
Target:  5'- aCCUACGuccagCGCUugGCCGaagGCGGCGAc -3'
miRNA:   3'- -GGAUGUuga--GCGA--CGGCa--UGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 18515 0.66 0.907307
Target:  5'- gCUGCAGCggccuUCGCaGCCGgcgGCAAccCGGGu -3'
miRNA:   3'- gGAUGUUG-----AGCGaCGGCa--UGUU--GCUC- -5'
26024 3' -50.5 NC_005342.2 + 30739 0.66 0.907307
Target:  5'- gCUGCAGCU-GCUGCagcauGUGCGGCa-- -3'
miRNA:   3'- gGAUGUUGAgCGACGg----CAUGUUGcuc -5'
26024 3' -50.5 NC_005342.2 + 44938 0.66 0.907307
Target:  5'- --aACGGCggccaGCUGCCGUACGAUcuGAa -3'
miRNA:   3'- ggaUGUUGag---CGACGGCAUGUUG--CUc -5'
26024 3' -50.5 NC_005342.2 + 24986 0.66 0.907307
Target:  5'- aCCggUACcGCgaCGCUGCCG-GCGGCGAa -3'
miRNA:   3'- -GG--AUGuUGa-GCGACGGCaUGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 45322 0.66 0.907307
Target:  5'- gCUGCcgGugUCGCcGCCGaUACGccgGCGAGc -3'
miRNA:   3'- gGAUG--UugAGCGaCGGC-AUGU---UGCUC- -5'
26024 3' -50.5 NC_005342.2 + 3343 0.66 0.900324
Target:  5'- --cGCAGCUCGaucaGCUGgcGCAGCGAGu -3'
miRNA:   3'- ggaUGUUGAGCga--CGGCa-UGUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 17135 0.66 0.900324
Target:  5'- --aGCAGCUCGC-GCCGcu-GACGGGc -3'
miRNA:   3'- ggaUGUUGAGCGaCGGCaugUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 31054 0.67 0.893052
Target:  5'- gCCggcCAGCUucaucagacCGCUGCCGaGCGACGcAGc -3'
miRNA:   3'- -GGau-GUUGA---------GCGACGGCaUGUUGC-UC- -5'
26024 3' -50.5 NC_005342.2 + 41323 0.67 0.893052
Target:  5'- gCCUGCucgagcgcgccgAGCgCGCUGCCGagcGCGAuCGAGu -3'
miRNA:   3'- -GGAUG------------UUGaGCGACGGCa--UGUU-GCUC- -5'
26024 3' -50.5 NC_005342.2 + 38555 0.67 0.885496
Target:  5'- aCCggACGGCgugCGCaGCCcgcaggGCAGCGAGg -3'
miRNA:   3'- -GGa-UGUUGa--GCGaCGGca----UGUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 44122 0.67 0.885496
Target:  5'- gCUACAACggcuugccggguUCGCuUGCCG-GCGcguGCGAGg -3'
miRNA:   3'- gGAUGUUG------------AGCG-ACGGCaUGU---UGCUC- -5'
26024 3' -50.5 NC_005342.2 + 7282 0.67 0.877662
Target:  5'- cCCgaaACGuUUCGcCUGCCGUGCGAcCGAc -3'
miRNA:   3'- -GGa--UGUuGAGC-GACGGCAUGUU-GCUc -5'
26024 3' -50.5 NC_005342.2 + 46813 0.67 0.869555
Target:  5'- aCCUACucgcGCUCgaaauGCUGCCGcuCAGCGGu -3'
miRNA:   3'- -GGAUGu---UGAG-----CGACGGCauGUUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.