miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26024 3' -50.5 NC_005342.2 + 41371 0.72 0.597225
Target:  5'- aCCUGCGACUgcggCGCUgggcggcgcGCCGUgGCGGCGAu -3'
miRNA:   3'- -GGAUGUUGA----GCGA---------CGGCA-UGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 7282 0.67 0.877662
Target:  5'- cCCgaaACGuUUCGcCUGCCGUGCGAcCGAc -3'
miRNA:   3'- -GGa--UGUuGAGC-GACGGCAUGUU-GCUc -5'
26024 3' -50.5 NC_005342.2 + 37417 0.67 0.864563
Target:  5'- gCCUGCGAUgcgcccgauaaacgCGCgaugGCCGUcuguuGCGACGAu -3'
miRNA:   3'- -GGAUGUUGa-------------GCGa---CGGCA-----UGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 34516 0.67 0.861183
Target:  5'- gCCUGCGcAUUCGCgacGCgGUGCGcACGAc -3'
miRNA:   3'- -GGAUGU-UGAGCGa--CGgCAUGU-UGCUc -5'
26024 3' -50.5 NC_005342.2 + 44065 0.68 0.852555
Target:  5'- gCCUGCcGC-CGCUGCCGccuggcgcUACcACGAc -3'
miRNA:   3'- -GGAUGuUGaGCGACGGC--------AUGuUGCUc -5'
26024 3' -50.5 NC_005342.2 + 11975 0.68 0.825219
Target:  5'- aCUcGCGugUCGCUGCauguCGUGgcuCGGCGAGg -3'
miRNA:   3'- gGA-UGUugAGCGACG----GCAU---GUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 29456 0.68 0.815657
Target:  5'- gCUGCAGCgucCGUcggcgUGCCGgcaGCGGCGGGu -3'
miRNA:   3'- gGAUGUUGa--GCG-----ACGGCa--UGUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 17168 0.7 0.710629
Target:  5'- aCCUGCAggcGCUCGC-GUCGUuCGGCGuGa -3'
miRNA:   3'- -GGAUGU---UGAGCGaCGGCAuGUUGCuC- -5'
26024 3' -50.5 NC_005342.2 + 33163 0.72 0.631402
Target:  5'- gUCUGCGaaugaccuGCUCGC-GCgCGUGCGGCGAa -3'
miRNA:   3'- -GGAUGU--------UGAGCGaCG-GCAUGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 38555 0.67 0.885496
Target:  5'- aCCggACGGCgugCGCaGCCcgcaggGCAGCGAGg -3'
miRNA:   3'- -GGa-UGUUGa--GCGaCGGca----UGUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 41323 0.67 0.893052
Target:  5'- gCCUGCucgagcgcgccgAGCgCGCUGCCGagcGCGAuCGAGu -3'
miRNA:   3'- -GGAUG------------UUGaGCGACGGCa--UGUU-GCUC- -5'
26024 3' -50.5 NC_005342.2 + 3343 0.66 0.900324
Target:  5'- --cGCAGCUCGaucaGCUGgcGCAGCGAGu -3'
miRNA:   3'- ggaUGUUGAGCga--CGGCa-UGUUGCUC- -5'
26024 3' -50.5 NC_005342.2 + 28734 0.66 0.925897
Target:  5'- cCCgUAUuGCUCGagcGCCGUGCGgaacgccGCGAGa -3'
miRNA:   3'- -GG-AUGuUGAGCga-CGGCAUGU-------UGCUC- -5'
26024 3' -50.5 NC_005342.2 + 20267 0.66 0.920394
Target:  5'- aCCUACGACgucUCGCUGCagcgcguucagGUGC-GCGAc -3'
miRNA:   3'- -GGAUGUUG---AGCGACGg----------CAUGuUGCUc -5'
26024 3' -50.5 NC_005342.2 + 1204 0.66 0.920394
Target:  5'- uCCUGCAGUUCGCcgaUGCUGUugAAuuCGAa -3'
miRNA:   3'- -GGAUGUUGAGCG---ACGGCAugUU--GCUc -5'
26024 3' -50.5 NC_005342.2 + 35561 0.66 0.913998
Target:  5'- aCCUACGuccagCGCUugGCCGaagGCGGCGAc -3'
miRNA:   3'- -GGAUGUuga--GCGA--CGGCa--UGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 45322 0.66 0.907307
Target:  5'- gCUGCcgGugUCGCcGCCGaUACGccgGCGAGc -3'
miRNA:   3'- gGAUG--UugAGCGaCGGC-AUGU---UGCUC- -5'
26024 3' -50.5 NC_005342.2 + 24986 0.66 0.907307
Target:  5'- aCCggUACcGCgaCGCUGCCG-GCGGCGAa -3'
miRNA:   3'- -GG--AUGuUGa-GCGACGGCaUGUUGCUc -5'
26024 3' -50.5 NC_005342.2 + 44938 0.66 0.907307
Target:  5'- --aACGGCggccaGCUGCCGUACGAUcuGAa -3'
miRNA:   3'- ggaUGUUGag---CGACGGCAUGUUG--CUc -5'
26024 3' -50.5 NC_005342.2 + 17135 0.66 0.900324
Target:  5'- --aGCAGCUCGC-GCCGcu-GACGGGc -3'
miRNA:   3'- ggaUGUUGAGCGaCGGCaugUUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.