miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26024 5' -60.5 NC_005342.2 + 29360 0.7 0.227933
Target:  5'- -cCCGCGC-CUGCCGCGCcGGuCGUUu -3'
miRNA:   3'- auGGCGUGaGAUGGCGCGcCC-GCAGc -5'
26024 5' -60.5 NC_005342.2 + 15407 0.68 0.307359
Target:  5'- gGCCGCGCUCaUGuuGCaCGuGGCGUUc -3'
miRNA:   3'- aUGGCGUGAG-AUggCGcGC-CCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 45240 0.68 0.3
Target:  5'- gGCCGCAauCUCgGCCGUGaCGGGCa--- -3'
miRNA:   3'- aUGGCGU--GAGaUGGCGC-GCCCGcagc -5'
26024 5' -60.5 NC_005342.2 + 26998 0.68 0.293494
Target:  5'- cGCCGCGCgcguuugcgUCcggccccguggcguaGCCGC-CGGGCGUCGg -3'
miRNA:   3'- aUGGCGUG---------AGa--------------UGGCGcGCCCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 28169 0.69 0.278742
Target:  5'- cAUCGCACUCaa-CGCGCGGcacgaucccguGCGUUGg -3'
miRNA:   3'- aUGGCGUGAGaugGCGCGCC-----------CGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 18004 0.69 0.278742
Target:  5'- --aCGCGCUgauCgCGCGCGGcGCGUCGa -3'
miRNA:   3'- augGCGUGAgauG-GCGCGCC-CGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 45968 0.69 0.265247
Target:  5'- gGCCGUgACgUCgggcaucauCCGCGCGGGCGUg- -3'
miRNA:   3'- aUGGCG-UG-AGau-------GGCGCGCCCGCAgc -5'
26024 5' -60.5 NC_005342.2 + 28339 0.69 0.263269
Target:  5'- gGCCGCGCUC-GCCGCGCucGccgugaccuuguucGCGUCGu -3'
miRNA:   3'- aUGGCGUGAGaUGGCGCGc-C--------------CGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 22850 0.69 0.258701
Target:  5'- cGCCGUGCUC-GCCGUGCccgGGGUGaCGg -3'
miRNA:   3'- aUGGCGUGAGaUGGCGCG---CCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 37110 0.67 0.330261
Target:  5'- cGCCgGCGUUCUucCCGCGCGG-CGUCa -3'
miRNA:   3'- aUGG-CGUGAGAu-GGCGCGCCcGCAGc -5'
26024 5' -60.5 NC_005342.2 + 3175 0.67 0.346214
Target:  5'- uUGCCcggGCGCg--GCCGCGCGGuguucaGCGUCu -3'
miRNA:   3'- -AUGG---CGUGagaUGGCGCGCC------CGCAGc -5'
26024 5' -60.5 NC_005342.2 + 22034 0.67 0.346214
Target:  5'- cGCCGCGCgcaauagCUACgugcaaGCGCaGGGCGgCGa -3'
miRNA:   3'- aUGGCGUGa------GAUGg-----CGCG-CCCGCaGC- -5'
26024 5' -60.5 NC_005342.2 + 16918 0.66 0.424615
Target:  5'- gGCCgGCAUUgCgggcGCCGUGCucGGCGUCGg -3'
miRNA:   3'- aUGG-CGUGA-Ga---UGGCGCGc-CCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 28401 0.66 0.415389
Target:  5'- gUGCCGCGC-CgACCGUGCGaccGGCGcCc -3'
miRNA:   3'- -AUGGCGUGaGaUGGCGCGC---CCGCaGc -5'
26024 5' -60.5 NC_005342.2 + 41632 0.66 0.406288
Target:  5'- aUACCgGCGCaUCguaaaAUCGCGCGGuGCGgUCGu -3'
miRNA:   3'- -AUGG-CGUG-AGa----UGGCGCGCC-CGC-AGC- -5'
26024 5' -60.5 NC_005342.2 + 22644 0.66 0.397312
Target:  5'- --aCGUACgUCgcgGCCGuCGCcGGCGUCGg -3'
miRNA:   3'- augGCGUG-AGa--UGGC-GCGcCCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 45649 0.67 0.362713
Target:  5'- gGCCGCACggugCUcgcguuCCGCcaguucaacGCGGGCGUg- -3'
miRNA:   3'- aUGGCGUGa---GAu-----GGCG---------CGCCCGCAgc -5'
26024 5' -60.5 NC_005342.2 + 17910 0.67 0.362713
Target:  5'- cGCCgGUGCg--GCCGCGCGccuggcggguGGCGUCGc -3'
miRNA:   3'- aUGG-CGUGagaUGGCGCGC----------CCGCAGC- -5'
26024 5' -60.5 NC_005342.2 + 814 0.67 0.354396
Target:  5'- cGCCuGCGCgUCgcuCgGCGCGGGUGUUu -3'
miRNA:   3'- aUGG-CGUG-AGau-GgCGCGCCCGCAGc -5'
26024 5' -60.5 NC_005342.2 + 28062 0.67 0.351107
Target:  5'- gACgGCGCggauggcccagagCUGCUgaGCGCGGGCGUa- -3'
miRNA:   3'- aUGgCGUGa------------GAUGG--CGCGCCCGCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.