miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26026 3' -53.6 NC_005342.2 + 24645 0.66 0.780989
Target:  5'- -aUCACGGUCGc-AgGGACGuUGACCa -3'
miRNA:   3'- gaAGUGCCAGCacUgCUUGC-GCUGGc -5'
26026 3' -53.6 NC_005342.2 + 45206 1.1 0.001396
Target:  5'- gCUUCACGGUCGUGACGAACGCGACCGg -3'
miRNA:   3'- -GAAGUGCCAGCACUGCUUGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 44967 0.72 0.450676
Target:  5'- gUUCGCGcgcuacGUCGcGGCGGACGCG-CCGg -3'
miRNA:   3'- gAAGUGC------CAGCaCUGCUUGCGCuGGC- -5'
26026 3' -53.6 NC_005342.2 + 20154 0.71 0.543789
Target:  5'- gCUUCGUGGUCGacuacucGGCGGACaCGACCGa -3'
miRNA:   3'- -GAAGUGCCAGCa------CUGCUUGcGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 39807 0.7 0.587237
Target:  5'- -cUCAcCGaGUaCGcGAUGGACGCGGCCGa -3'
miRNA:   3'- gaAGU-GC-CA-GCaCUGCUUGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 42645 0.69 0.619143
Target:  5'- --cCACGGcggCGUGACGAuccaGCGCGAaggcgcgaaagacCCGa -3'
miRNA:   3'- gaaGUGCCa--GCACUGCU----UGCGCU-------------GGC- -5'
26026 3' -53.6 NC_005342.2 + 32793 0.69 0.631283
Target:  5'- ----cCGGcCGUGcggauuGCGAACGCGACCu -3'
miRNA:   3'- gaaguGCCaGCAC------UGCUUGCGCUGGc -5'
26026 3' -53.6 NC_005342.2 + 2607 0.69 0.641217
Target:  5'- cCUUCACGaaCGUGaucuGCGAGCaguuguuGCGACCGa -3'
miRNA:   3'- -GAAGUGCcaGCAC----UGCUUG-------CGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 46899 0.69 0.653348
Target:  5'- -cUUGCGGcCGUGAUGAAUGUcGCCa -3'
miRNA:   3'- gaAGUGCCaGCACUGCUUGCGcUGGc -5'
26026 3' -53.6 NC_005342.2 + 45943 0.69 0.664357
Target:  5'- --gCGCGGgcgucgaUGUGAUcGACGCGGCCGu -3'
miRNA:   3'- gaaGUGCCa------GCACUGcUUGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 27524 0.67 0.770933
Target:  5'- gCUUCGCGccgccgaacguGUUuucgaaggcgGUGACGAgcgGCGCGGCCa -3'
miRNA:   3'- -GAAGUGC-----------CAG----------CACUGCU---UGCGCUGGc -5'
26026 3' -53.6 NC_005342.2 + 4664 0.67 0.760733
Target:  5'- -cUCGCGuUCGaGGCGAgcGCGCGACaCGc -3'
miRNA:   3'- gaAGUGCcAGCaCUGCU--UGCGCUG-GC- -5'
26026 3' -53.6 NC_005342.2 + 2104 0.67 0.749361
Target:  5'- -aUCACGG-CGUGAuccucgaacuugcCGuAGCGCGcACCGc -3'
miRNA:   3'- gaAGUGCCaGCACU-------------GC-UUGCGC-UGGC- -5'
26026 3' -53.6 NC_005342.2 + 19731 0.67 0.738896
Target:  5'- -gUCACGGUcacCGUGACGcgcccgGACGCGcaaggcaACCa -3'
miRNA:   3'- gaAGUGCCA---GCACUGC------UUGCGC-------UGGc -5'
26026 3' -53.6 NC_005342.2 + 27735 0.67 0.729385
Target:  5'- -gUCGCGGUCGaucgccgccACGAaaGCGCGAgCCGc -3'
miRNA:   3'- gaAGUGCCAGCac-------UGCU--UGCGCU-GGC- -5'
26026 3' -53.6 NC_005342.2 + 38057 0.68 0.718725
Target:  5'- --gCGCGGcgaccugcUCGUGugGGacggucACGCGAUCGa -3'
miRNA:   3'- gaaGUGCC--------AGCACugCU------UGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 30324 0.68 0.670948
Target:  5'- uUUCGCGaaCGUGucggccacggcacCGGGCGCGGCCGg -3'
miRNA:   3'- gAAGUGCcaGCACu------------GCUUGCGCUGGC- -5'
26026 3' -53.6 NC_005342.2 + 9263 0.66 0.820475
Target:  5'- gCUUCACGGUCGgguuuucacCGCcGGCCGg -3'
miRNA:   3'- -GAAGUGCCAGCacugcuu--GCG-CUGGC- -5'
26026 3' -53.6 NC_005342.2 + 28231 0.73 0.431169
Target:  5'- -gUCACGGUgacCGUGACGcgcACGCGGCg- -3'
miRNA:   3'- gaAGUGCCA---GCACUGCu--UGCGCUGgc -5'
26026 3' -53.6 NC_005342.2 + 37157 0.72 0.480815
Target:  5'- ---uGCGG-CGUGACGAACgGCG-CCGa -3'
miRNA:   3'- gaagUGCCaGCACUGCUUG-CGCuGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.