miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26027 3' -55.5 NC_005342.2 + 28722 0.66 0.682955
Target:  5'- aUCGgcguGugCGUCGCGugcggccagcacgauGACGAGCgcgaGCACu -3'
miRNA:   3'- gAGU----CugGCAGCGC---------------UUGCUCGa---CGUG- -5'
26027 3' -55.5 NC_005342.2 + 45169 0.66 0.678549
Target:  5'- -cCGGACUucguaGUCGCcuacGACGcGCUGCGCa -3'
miRNA:   3'- gaGUCUGG-----CAGCGc---UUGCuCGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 40102 0.66 0.667504
Target:  5'- -cCAGA-CGUggaCGCGAugGGGCgaGCGCg -3'
miRNA:   3'- gaGUCUgGCA---GCGCUugCUCGa-CGUG- -5'
26027 3' -55.5 NC_005342.2 + 17315 0.66 0.667504
Target:  5'- -aCGuGAUCGUUGCGAugaagGCGAGCgucgacGCGCu -3'
miRNA:   3'- gaGU-CUGGCAGCGCU-----UGCUCGa-----CGUG- -5'
26027 3' -55.5 NC_005342.2 + 32109 0.66 0.656424
Target:  5'- gUCAcGGCgGcUCGCucGCGGGCUcGCACa -3'
miRNA:   3'- gAGU-CUGgC-AGCGcuUGCUCGA-CGUG- -5'
26027 3' -55.5 NC_005342.2 + 2963 0.66 0.656424
Target:  5'- uUCGGGaCGUCGUucGCGAGCcaagGCGCc -3'
miRNA:   3'- gAGUCUgGCAGCGcuUGCUCGa---CGUG- -5'
26027 3' -55.5 NC_005342.2 + 11048 0.66 0.644211
Target:  5'- aCUCGGcaccggcGCgCGUCGUGAGCGGcgugucgccgcGCUGCGg -3'
miRNA:   3'- -GAGUC-------UG-GCAGCGCUUGCU-----------CGACGUg -5'
26027 3' -55.5 NC_005342.2 + 2651 0.66 0.634208
Target:  5'- aUCAcGAUC-UCGCGAcCGGGCUGguCg -3'
miRNA:   3'- gAGU-CUGGcAGCGCUuGCUCGACguG- -5'
26027 3' -55.5 NC_005342.2 + 47355 0.67 0.623092
Target:  5'- uUCAGcuGCgCGUCGCcgaGAUGGGCgGCACg -3'
miRNA:   3'- gAGUC--UG-GCAGCGc--UUGCUCGaCGUG- -5'
26027 3' -55.5 NC_005342.2 + 27434 0.67 0.611983
Target:  5'- -aCAGGCCGccaGCGAACGGcGCgGCGg -3'
miRNA:   3'- gaGUCUGGCag-CGCUUGCU-CGaCGUg -5'
26027 3' -55.5 NC_005342.2 + 26468 0.67 0.611983
Target:  5'- --uGGAUCGUCGUGAaugugcgucGCGuGCcGCACg -3'
miRNA:   3'- gagUCUGGCAGCGCU---------UGCuCGaCGUG- -5'
26027 3' -55.5 NC_005342.2 + 42500 0.67 0.611983
Target:  5'- uUCAGGUCGUCuacgccgaaGCGAAguGGCUGCGCa -3'
miRNA:   3'- gAGUCUGGCAG---------CGCUUgcUCGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 39048 0.67 0.600893
Target:  5'- -aCAGcGCCGgCGCGAACGAagccGCgucGCGCa -3'
miRNA:   3'- gaGUC-UGGCaGCGCUUGCU----CGa--CGUG- -5'
26027 3' -55.5 NC_005342.2 + 20743 0.67 0.58983
Target:  5'- -cCGGACa-UCGCcGACGcGGCUGCGCg -3'
miRNA:   3'- gaGUCUGgcAGCGcUUGC-UCGACGUG- -5'
26027 3' -55.5 NC_005342.2 + 12125 0.67 0.58983
Target:  5'- -gCAGGCCGUCGCcaaccuuGCGuacguGGCUGgCGCg -3'
miRNA:   3'- gaGUCUGGCAGCGcu-----UGC-----UCGAC-GUG- -5'
26027 3' -55.5 NC_005342.2 + 30403 0.67 0.58983
Target:  5'- aUCAGAUCGUCGUGcaacgcuuCGGGaaugUGCGCg -3'
miRNA:   3'- gAGUCUGGCAGCGCuu------GCUCg---ACGUG- -5'
26027 3' -55.5 NC_005342.2 + 22824 0.67 0.58983
Target:  5'- aUCGGGCagGcCGCGAACGuGC-GCGCc -3'
miRNA:   3'- gAGUCUGg-CaGCGCUUGCuCGaCGUG- -5'
26027 3' -55.5 NC_005342.2 + 30819 0.67 0.578803
Target:  5'- --uGGcCCGUCaGCGGcGCGAGCUGCuGCu -3'
miRNA:   3'- gagUCuGGCAG-CGCU-UGCUCGACG-UG- -5'
26027 3' -55.5 NC_005342.2 + 5542 0.67 0.567821
Target:  5'- -gCAGACCGUucagcucgauugUGCGGccauCGGGCaUGCGCa -3'
miRNA:   3'- gaGUCUGGCA------------GCGCUu---GCUCG-ACGUG- -5'
26027 3' -55.5 NC_005342.2 + 18500 0.68 0.552538
Target:  5'- -cCAGAgCGgcgugcagaacuaCGCGAGCGGGCaGCGCu -3'
miRNA:   3'- gaGUCUgGCa------------GCGCUUGCUCGaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.