miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26028 3' -56.9 NC_005342.2 + 3365 0.66 0.590991
Target:  5'- gGCGUCGCCGuCGUCGcgggagcuucggugaAGAacaGCUGCg- -3'
miRNA:   3'- -UGCGGCGGUuGUAGC---------------UCUg--CGACGag -5'
26028 3' -56.9 NC_005342.2 + 25533 0.66 0.590991
Target:  5'- cGCGCCGCUcgaugucagcgggucGACAUUGGcGAUcaGCUGCg- -3'
miRNA:   3'- -UGCGGCGG---------------UUGUAGCU-CUG--CGACGag -5'
26028 3' -56.9 NC_005342.2 + 5125 0.66 0.586586
Target:  5'- -aGCCGCCcguguUGUCGAGcaGCGCaGCUUg -3'
miRNA:   3'- ugCGGCGGuu---GUAGCUC--UGCGaCGAG- -5'
26028 3' -56.9 NC_005342.2 + 16980 0.66 0.586586
Target:  5'- uACGCCGUCGccGCGcucgacUCGuGcACGCUGCa- -3'
miRNA:   3'- -UGCGGCGGU--UGU------AGCuC-UGCGACGag -5'
26028 3' -56.9 NC_005342.2 + 36071 0.66 0.575603
Target:  5'- cGCGCCGCUGcGCAUgcCGGGcCGCgacgacaaggUGCUCg -3'
miRNA:   3'- -UGCGGCGGU-UGUA--GCUCuGCG----------ACGAG- -5'
26028 3' -56.9 NC_005342.2 + 1935 0.66 0.575603
Target:  5'- -gGCCGCU-GCAUCGAucUGCUGCa- -3'
miRNA:   3'- ugCGGCGGuUGUAGCUcuGCGACGag -5'
26028 3' -56.9 NC_005342.2 + 30870 0.66 0.575603
Target:  5'- uCGCCGCCugccuuGGCGUCGccgcccaaacGGCGCgccgUGCUCg -3'
miRNA:   3'- uGCGGCGG------UUGUAGCu---------CUGCG----ACGAG- -5'
26028 3' -56.9 NC_005342.2 + 20553 0.66 0.575603
Target:  5'- cGCGCCGCUGAuCGUCGGcGCGUcgGgUCg -3'
miRNA:   3'- -UGCGGCGGUU-GUAGCUcUGCGa-CgAG- -5'
26028 3' -56.9 NC_005342.2 + 28246 0.66 0.575603
Target:  5'- cACGCCaCCAGCGcCGAGcACGCgaGCa- -3'
miRNA:   3'- -UGCGGcGGUUGUaGCUC-UGCGa-CGag -5'
26028 3' -56.9 NC_005342.2 + 9457 0.66 0.573412
Target:  5'- cCGCCGCCgAGCugcUCGAGcuucugcagaauCGCUGCg- -3'
miRNA:   3'- uGCGGCGG-UUGu--AGCUCu-----------GCGACGag -5'
26028 3' -56.9 NC_005342.2 + 17142 0.66 0.571223
Target:  5'- cGCGCCGCUGACGggCcAGGCGCcgaaccugcaggcGCUCg -3'
miRNA:   3'- -UGCGGCGGUUGUa-GcUCUGCGa------------CGAG- -5'
26028 3' -56.9 NC_005342.2 + 15262 0.66 0.564667
Target:  5'- gGCGCgGUCAGCAUCagcaccGGGCGCUuGCcgUCg -3'
miRNA:   3'- -UGCGgCGGUUGUAGc-----UCUGCGA-CG--AG- -5'
26028 3' -56.9 NC_005342.2 + 2036 0.66 0.564667
Target:  5'- gGCGCUGauCCGGCG-CGAGACGC-GCcCa -3'
miRNA:   3'- -UGCGGC--GGUUGUaGCUCUGCGaCGaG- -5'
26028 3' -56.9 NC_005342.2 + 38733 0.66 0.564667
Target:  5'- uAUGCCGCacGCggCGAGGCGCccccGUUCg -3'
miRNA:   3'- -UGCGGCGguUGuaGCUCUGCGa---CGAG- -5'
26028 3' -56.9 NC_005342.2 + 34101 0.66 0.564667
Target:  5'- gUGCCgGCCGACuUCGcgcGGCGCggcgcGCUCa -3'
miRNA:   3'- uGCGG-CGGUUGuAGCu--CUGCGa----CGAG- -5'
26028 3' -56.9 NC_005342.2 + 6695 0.66 0.564667
Target:  5'- -gGUCGUgAGCAUCGcGACGCUGaCg- -3'
miRNA:   3'- ugCGGCGgUUGUAGCuCUGCGAC-Gag -5'
26028 3' -56.9 NC_005342.2 + 247 0.66 0.553786
Target:  5'- cACGCCGCCgAGCA-CGGucacggucGACGuCUGCg- -3'
miRNA:   3'- -UGCGGCGG-UUGUaGCU--------CUGC-GACGag -5'
26028 3' -56.9 NC_005342.2 + 16826 0.66 0.553786
Target:  5'- uCGCgGCCAagGCgAUCGAcgGGCGaCUGUUCg -3'
miRNA:   3'- uGCGgCGGU--UG-UAGCU--CUGC-GACGAG- -5'
26028 3' -56.9 NC_005342.2 + 22749 0.66 0.553786
Target:  5'- aGCGUCGCgggcguCGACGUCGAGuCGCgcagugaGUUCg -3'
miRNA:   3'- -UGCGGCG------GUUGUAGCUCuGCGa------CGAG- -5'
26028 3' -56.9 NC_005342.2 + 22657 0.66 0.542969
Target:  5'- cCGUCGCCGGCGUCGGcccgguugcGACGCcgaacacGCUg -3'
miRNA:   3'- uGCGGCGGUUGUAGCU---------CUGCGa------CGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.