miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26028 5' -58.5 NC_005342.2 + 32542 0.66 0.545249
Target:  5'- aGGAACGccacgugcaacaugaGCG-CGGCCUGCuCGaGUCGGu -3'
miRNA:   3'- gUCUUGC---------------CGCgGUUGGACG-GC-CAGCC- -5'
26028 5' -58.5 NC_005342.2 + 10011 0.66 0.541048
Target:  5'- -cGAACGGCGCgGcgcGCUUGCuCGacUCGGg -3'
miRNA:   3'- guCUUGCCGCGgU---UGGACG-GCc-AGCC- -5'
26028 5' -58.5 NC_005342.2 + 44775 0.66 0.530595
Target:  5'- -cGGGCGGCGC--GCCggGCCGGcucacCGGc -3'
miRNA:   3'- guCUUGCCGCGguUGGa-CGGCCa----GCC- -5'
26028 5' -58.5 NC_005342.2 + 17821 0.66 0.529554
Target:  5'- gCAGucgcuACGGCGCgCGAauucgguCCggcGCCGGUCGc -3'
miRNA:   3'- -GUCu----UGCCGCG-GUU-------GGa--CGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 1616 0.66 0.520216
Target:  5'- --cGGCGGCGUagcccugaauGCgCUGCgCGGUCGGa -3'
miRNA:   3'- gucUUGCCGCGgu--------UG-GACG-GCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 23147 0.66 0.520216
Target:  5'- -cGAuguUGGUGCCAucGCCcgucacGUCGGUCGGu -3'
miRNA:   3'- guCUu--GCCGCGGU--UGGa-----CGGCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 10567 0.66 0.520216
Target:  5'- -----gGGCcgGCCGACgaGCgGGUCGGg -3'
miRNA:   3'- gucuugCCG--CGGUUGgaCGgCCAGCC- -5'
26028 5' -58.5 NC_005342.2 + 9451 0.66 0.520216
Target:  5'- ---cGCGGCGCC--CCaUGCCGGacauuUCGGc -3'
miRNA:   3'- gucuUGCCGCGGuuGG-ACGGCC-----AGCC- -5'
26028 5' -58.5 NC_005342.2 + 29636 0.66 0.514028
Target:  5'- uGGAACGGCGUgAggaucgugcgcacgcGCgUGCCGG-CGa -3'
miRNA:   3'- gUCUUGCCGCGgU---------------UGgACGGCCaGCc -5'
26028 5' -58.5 NC_005342.2 + 27277 0.66 0.499707
Target:  5'- -uGAACGGuCGCC-ACgaGCCGG-CGa -3'
miRNA:   3'- guCUUGCC-GCGGuUGgaCGGCCaGCc -5'
26028 5' -58.5 NC_005342.2 + 30214 0.66 0.499707
Target:  5'- -cGAGCGuGCgGCCGACCaggcUGCCGGcCa- -3'
miRNA:   3'- guCUUGC-CG-CGGUUGG----ACGGCCaGcc -5'
26028 5' -58.5 NC_005342.2 + 4039 0.67 0.489587
Target:  5'- aCAGGuCGGCGgUcGCCaUGCCGGgcagcCGGa -3'
miRNA:   3'- -GUCUuGCCGCgGuUGG-ACGGCCa----GCC- -5'
26028 5' -58.5 NC_005342.2 + 40864 0.67 0.489587
Target:  5'- uGGAACaguuuGCGCugcgauugCAugCUGCCGGUCuGGa -3'
miRNA:   3'- gUCUUGc----CGCG--------GUugGACGGCCAG-CC- -5'
26028 5' -58.5 NC_005342.2 + 28478 0.67 0.489587
Target:  5'- -cGAGCGccGCGUCGACCgcGCgGGUCGcGg -3'
miRNA:   3'- guCUUGC--CGCGGUUGGa-CGgCCAGC-C- -5'
26028 5' -58.5 NC_005342.2 + 45292 0.67 0.479563
Target:  5'- ---cAUGGCGCuCGACCaGCCcGGUCGc -3'
miRNA:   3'- gucuUGCCGCG-GUUGGaCGG-CCAGCc -5'
26028 5' -58.5 NC_005342.2 + 17944 0.67 0.440528
Target:  5'- gCAGGugcgACGGCgGCCAGCC-GCC-GUCGa -3'
miRNA:   3'- -GUCU----UGCCG-CGGUUGGaCGGcCAGCc -5'
26028 5' -58.5 NC_005342.2 + 4946 0.67 0.440528
Target:  5'- uCGGcACGaGCGCaUAGCCgGCCGGgaUCGGc -3'
miRNA:   3'- -GUCuUGC-CGCG-GUUGGaCGGCC--AGCC- -5'
26028 5' -58.5 NC_005342.2 + 8622 0.67 0.440528
Target:  5'- uCGGcGCGGCGcCCGGCUUGCuCGugacggugccGUCGGc -3'
miRNA:   3'- -GUCuUGCCGC-GGUUGGACG-GC----------CAGCC- -5'
26028 5' -58.5 NC_005342.2 + 29740 0.68 0.431053
Target:  5'- uCGGGAuCGGacaucaggaaGUCGAUCUGCUGGUCGa -3'
miRNA:   3'- -GUCUU-GCCg---------CGGUUGGACGGCCAGCc -5'
26028 5' -58.5 NC_005342.2 + 31680 0.68 0.421699
Target:  5'- -uGAACa-CGCCGAagccgcCCUGCuCGGUCGGa -3'
miRNA:   3'- guCUUGccGCGGUU------GGACG-GCCAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.