miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26029 5' -52.6 NC_005342.2 + 16550 0.66 0.813275
Target:  5'- uCGAGCGUCGACGgucuauccaacacgGCGGaUGCGAAg- -3'
miRNA:   3'- -GCUCGCAGUUGCg-------------CGUCgACGUUUag -5'
26029 5' -52.6 NC_005342.2 + 3514 0.66 0.80936
Target:  5'- -aAGCGggaUCAACGCGguGCcgcGCAGcgCg -3'
miRNA:   3'- gcUCGC---AGUUGCGCguCGa--CGUUuaG- -5'
26029 5' -52.6 NC_005342.2 + 45306 0.66 0.799433
Target:  5'- -cGGCG-CGACGCuGCAGgCUGCcgguGUCg -3'
miRNA:   3'- gcUCGCaGUUGCG-CGUC-GACGuu--UAG- -5'
26029 5' -52.6 NC_005342.2 + 16942 0.66 0.799433
Target:  5'- -cGGCGUCGGCGCaGguGCgGCcGGUUc -3'
miRNA:   3'- gcUCGCAGUUGCG-CguCGaCGuUUAG- -5'
26029 5' -52.6 NC_005342.2 + 9326 0.66 0.799433
Target:  5'- --cGuCGUCGGCGCGCGGCgucggGCcu-UCu -3'
miRNA:   3'- gcuC-GCAGUUGCGCGUCGa----CGuuuAG- -5'
26029 5' -52.6 NC_005342.2 + 25516 0.66 0.799433
Target:  5'- cCGAgcGCGUCcugguACGCGCcGCUcgaugucaGCGGGUCg -3'
miRNA:   3'- -GCU--CGCAGu----UGCGCGuCGA--------CGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 38461 0.66 0.793386
Target:  5'- uCGAGCaa-AACGCGCAGgcgcacgcagcgauuCUGCAGAa- -3'
miRNA:   3'- -GCUCGcagUUGCGCGUC---------------GACGUUUag -5'
26029 5' -52.6 NC_005342.2 + 4529 0.66 0.789317
Target:  5'- gCGAcGCGUCAGgugccaaccCGCGCAGUguuUGCAc--- -3'
miRNA:   3'- -GCU-CGCAGUU---------GCGCGUCG---ACGUuuag -5'
26029 5' -52.6 NC_005342.2 + 6109 0.66 0.789317
Target:  5'- uGAGCGUCAuguCGUGCAcCgGCAAc-- -3'
miRNA:   3'- gCUCGCAGUu--GCGCGUcGaCGUUuag -5'
26029 5' -52.6 NC_005342.2 + 46477 0.66 0.779025
Target:  5'- cCGAcucGcCGUCGcuCGCGCAGUUcgaGCAAAUCu -3'
miRNA:   3'- -GCU---C-GCAGUu-GCGCGUCGA---CGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 44926 0.66 0.768568
Target:  5'- cCGGGCaucGUCAACgGCGgcCAGCUGCcguacGAUCu -3'
miRNA:   3'- -GCUCG---CAGUUG-CGC--GUCGACGu----UUAG- -5'
26029 5' -52.6 NC_005342.2 + 14001 0.66 0.767513
Target:  5'- uGGGCGUCAaguGCGaccgGCGGCgacaaugUGCGAAUUc -3'
miRNA:   3'- gCUCGCAGU---UGCg---CGUCG-------ACGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 45349 0.67 0.757959
Target:  5'- gCGAGCG-CGAugaacCGCGCGGUcgGCcuGUCg -3'
miRNA:   3'- -GCUCGCaGUU-----GCGCGUCGa-CGuuUAG- -5'
26029 5' -52.6 NC_005342.2 + 38932 0.67 0.757959
Target:  5'- -cGGCGUCGACGUGUc---GCAGGUCg -3'
miRNA:   3'- gcUCGCAGUUGCGCGucgaCGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 27986 0.67 0.747211
Target:  5'- uGAGgcCGaCAGCGCGCAGUcggGCAAAg- -3'
miRNA:   3'- gCUC--GCaGUUGCGCGUCGa--CGUUUag -5'
26029 5' -52.6 NC_005342.2 + 38970 0.67 0.747211
Target:  5'- cCGAGCGgccggCAggcgcACGCGCGcGCgaucGCAGGUUg -3'
miRNA:   3'- -GCUCGCa----GU-----UGCGCGU-CGa---CGUUUAG- -5'
26029 5' -52.6 NC_005342.2 + 42022 0.67 0.747211
Target:  5'- cCGAgGCGUaucGCGUGCuGUUGCAGcgCg -3'
miRNA:   3'- -GCU-CGCAgu-UGCGCGuCGACGUUuaG- -5'
26029 5' -52.6 NC_005342.2 + 27184 0.67 0.7407
Target:  5'- gGAGCGcaggcgugucgacguUCAgGCGCGCAGCcGC--GUCg -3'
miRNA:   3'- gCUCGC---------------AGU-UGCGCGUCGaCGuuUAG- -5'
26029 5' -52.6 NC_005342.2 + 8889 0.67 0.736336
Target:  5'- -uGGCGUCGAUGCGCGacGCgGCu--UCg -3'
miRNA:   3'- gcUCGCAGUUGCGCGU--CGaCGuuuAG- -5'
26029 5' -52.6 NC_005342.2 + 20638 0.67 0.725349
Target:  5'- gCGAGCGUCGcaACgGCGCuGCgccagugGCAGGa- -3'
miRNA:   3'- -GCUCGCAGU--UG-CGCGuCGa------CGUUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.