miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26030 3' -53 NC_005342.2 + 19906 0.66 0.807201
Target:  5'- gGCAAGAcguGCUcaCGCCGAUcacGaGCgauACGAUCa -3'
miRNA:   3'- -CGUUCUu--CGA--GCGGCUA---C-CG---UGCUAG- -5'
26030 3' -53 NC_005342.2 + 39502 0.66 0.807201
Target:  5'- gGCu---GGCUCGCCGucgcgaGGUACGAa- -3'
miRNA:   3'- -CGuucuUCGAGCGGCua----CCGUGCUag -5'
26030 3' -53 NC_005342.2 + 28652 0.66 0.797312
Target:  5'- uGCGcAGcGGCgCGCCGA-GGCACGcGUUg -3'
miRNA:   3'- -CGU-UCuUCGaGCGGCUaCCGUGC-UAG- -5'
26030 3' -53 NC_005342.2 + 17896 0.66 0.78724
Target:  5'- cGCGuGAAGCUgucCGCCGGUgcGGC-CGcgCg -3'
miRNA:   3'- -CGUuCUUCGA---GCGGCUA--CCGuGCuaG- -5'
26030 3' -53 NC_005342.2 + 8206 0.66 0.784184
Target:  5'- uGCGAGgcGUccgCGCCG-UGGCGCcgcgcgaguuccguGAUCa -3'
miRNA:   3'- -CGUUCuuCGa--GCGGCuACCGUG--------------CUAG- -5'
26030 3' -53 NC_005342.2 + 2844 0.66 0.776996
Target:  5'- cCAGGucugcGGcCUUGCCGAccUGGCGCuGGUCu -3'
miRNA:   3'- cGUUCu----UC-GAGCGGCU--ACCGUG-CUAG- -5'
26030 3' -53 NC_005342.2 + 18294 0.66 0.776996
Target:  5'- ---cGAAGUucuUCGCCGGcacgcgcgUGcGCACGAUCc -3'
miRNA:   3'- cguuCUUCG---AGCGGCU--------AC-CGUGCUAG- -5'
26030 3' -53 NC_005342.2 + 41334 0.66 0.766593
Target:  5'- cGCGccGAGCgCGCUGccGaGCGCGAUCg -3'
miRNA:   3'- -CGUucUUCGaGCGGCuaC-CGUGCUAG- -5'
26030 3' -53 NC_005342.2 + 28056 0.66 0.766593
Target:  5'- cGUGAGcacGuCUUGCCaGAUGcGCGCGAUCu -3'
miRNA:   3'- -CGUUCuu-C-GAGCGG-CUAC-CGUGCUAG- -5'
26030 3' -53 NC_005342.2 + 45627 0.66 0.766593
Target:  5'- uCGAGguGCUUGCCGAgcUGGcCGCGuugCg -3'
miRNA:   3'- cGUUCuuCGAGCGGCU--ACC-GUGCua-G- -5'
26030 3' -53 NC_005342.2 + 10850 0.66 0.756043
Target:  5'- cGCGGGAAGaaCGCC---GGCGCGAcagUCa -3'
miRNA:   3'- -CGUUCUUCgaGCGGcuaCCGUGCU---AG- -5'
26030 3' -53 NC_005342.2 + 30714 0.67 0.745357
Target:  5'- uGCGGGcuGCUCGCaCGAUaGGUGCGcugCa -3'
miRNA:   3'- -CGUUCuuCGAGCG-GCUA-CCGUGCua-G- -5'
26030 3' -53 NC_005342.2 + 30892 0.67 0.73455
Target:  5'- aGguAGAccuuguggcccGGUUCGCCGAUguuccGGCGCGGc- -3'
miRNA:   3'- -CguUCU-----------UCGAGCGGCUA-----CCGUGCUag -5'
26030 3' -53 NC_005342.2 + 41018 0.67 0.71262
Target:  5'- aCGAGGccgAGCUCGCCcg-GcGCGCGAUg -3'
miRNA:   3'- cGUUCU---UCGAGCGGcuaC-CGUGCUAg -5'
26030 3' -53 NC_005342.2 + 44432 0.67 0.71262
Target:  5'- -gAAGgcGUUCGCCGA-GGCGCa--- -3'
miRNA:   3'- cgUUCuuCGAGCGGCUaCCGUGcuag -5'
26030 3' -53 NC_005342.2 + 7510 0.67 0.701523
Target:  5'- cGCGuucAGGAGCgacuugcCGCCGccGGUgACGAUCg -3'
miRNA:   3'- -CGU---UCUUCGa------GCGGCuaCCG-UGCUAG- -5'
26030 3' -53 NC_005342.2 + 9924 0.67 0.701523
Target:  5'- uCGAGgcGCauuUCGCCGGUcgccgcGuGCACGGUCg -3'
miRNA:   3'- cGUUCuuCG---AGCGGCUA------C-CGUGCUAG- -5'
26030 3' -53 NC_005342.2 + 35588 0.67 0.701523
Target:  5'- gGCGAcacuGGCgCGCCGGgcggGGCGCGggCg -3'
miRNA:   3'- -CGUUcu--UCGaGCGGCUa---CCGUGCuaG- -5'
26030 3' -53 NC_005342.2 + 29030 0.68 0.679125
Target:  5'- cGCAAGu--UUCGCCGggGGCcauagcuCGAUCg -3'
miRNA:   3'- -CGUUCuucGAGCGGCuaCCGu------GCUAG- -5'
26030 3' -53 NC_005342.2 + 36762 0.68 0.656536
Target:  5'- gGCAAGGAGCcgCGcCCGAaucacgUGcGCGCgGGUCg -3'
miRNA:   3'- -CGUUCUUCGa-GC-GGCU------AC-CGUG-CUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.