Results 1 - 20 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26031 | 5' | -58.2 | NC_005342.2 | + | 10971 | 0.66 | 0.524227 |
Target: 5'- ----cGACGUcGUcggaaagAGCGCCGCGCCg -3' miRNA: 3'- gacgaCUGCGaCAag-----UCGCGGCGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 20492 | 0.66 | 0.503365 |
Target: 5'- -gGCUGccgcgcaacCGCUGc-CGGCcgccGCCGCGCCg -3' miRNA: 3'- gaCGACu--------GCGACaaGUCG----CGGCGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 44565 | 0.66 | 0.524227 |
Target: 5'- -cGCgaGACGCUGaagaAGauCGCCGCGCg -3' miRNA: 3'- gaCGa-CUGCGACaag-UC--GCGGCGCGg -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 27587 | 0.66 | 0.482872 |
Target: 5'- aUGCccGACGUcGaaUAGCGCgGCGCCu -3' miRNA: 3'- gACGa-CUGCGaCaaGUCGCGgCGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 24897 | 0.66 | 0.480845 |
Target: 5'- -aGUUGAUGCUGUccaucacggucaCGGuCGUCGUGCCc -3' miRNA: 3'- gaCGACUGCGACAa-----------GUC-GCGGCGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 22182 | 0.66 | 0.482872 |
Target: 5'- -aGCcGGCgGCgGUUCGGCGgCUGCgGCCu -3' miRNA: 3'- gaCGaCUG-CGaCAAGUCGC-GGCG-CGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 30769 | 0.66 | 0.482872 |
Target: 5'- cCUGCUGAa--UGUUCA-CGCCgaacgacgcgaGCGCCu -3' miRNA: 3'- -GACGACUgcgACAAGUcGCGG-----------CGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 45911 | 0.66 | 0.49307 |
Target: 5'- -gGCUgGGCGC-GUcucgcgccggaUCAGCGCCagGCGCUc -3' miRNA: 3'- gaCGA-CUGCGaCA-----------AGUCGCGG--CGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 3961 | 0.66 | 0.49307 |
Target: 5'- aUGUUGGCgGC-GUUUAGCuGCUGCGUg -3' miRNA: 3'- gACGACUG-CGaCAAGUCG-CGGCGCGg -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 11890 | 0.66 | 0.503365 |
Target: 5'- -gGCauGCGCag--CGGCGCgCGCGCCa -3' miRNA: 3'- gaCGacUGCGacaaGUCGCG-GCGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 9074 | 0.66 | 0.503365 |
Target: 5'- -gGCUuGCGCUGUcaAGCGCaauGuCGCCg -3' miRNA: 3'- gaCGAcUGCGACAagUCGCGg--C-GCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 28320 | 0.66 | 0.481858 |
Target: 5'- gCUGUUGACgGCcagcgUCGGCcgcgcucGCCGCGCUc -3' miRNA: 3'- -GACGACUG-CGaca--AGUCG-------CGGCGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 26248 | 0.66 | 0.524227 |
Target: 5'- gCUGCUGGCGCacgu--GCGCauagaGCGCg -3' miRNA: 3'- -GACGACUGCGacaaguCGCGg----CGCGg -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 15779 | 0.66 | 0.513753 |
Target: 5'- aUGCUG-CgGCUcGUcgCGGCGCUgaaggGCGCCg -3' miRNA: 3'- gACGACuG-CGA-CAa-GUCGCGG-----CGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 20192 | 0.66 | 0.51271 |
Target: 5'- aUGCUGACGaacGUgcgccugacgggcUCGGCGgccgaccagauUCGCGCCg -3' miRNA: 3'- gACGACUGCga-CA-------------AGUCGC-----------GGCGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 28377 | 0.66 | 0.503365 |
Target: 5'- -cGUUGAuCGCgcgcgaUUCcccuuGUGCCGCGCCg -3' miRNA: 3'- gaCGACU-GCGac----AAGu----CGCGGCGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 45314 | 0.66 | 0.503365 |
Target: 5'- -cGCUGcAgGCUGc-CGGUGUCGcCGCCg -3' miRNA: 3'- gaCGAC-UgCGACaaGUCGCGGC-GCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 33667 | 0.66 | 0.503365 |
Target: 5'- -aGC-GGCGaa---CGGCGCCGCGCUg -3' miRNA: 3'- gaCGaCUGCgacaaGUCGCGGCGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 35677 | 0.66 | 0.502331 |
Target: 5'- -gGCUGGCGCg---CAGgaCGCCgcaaugcGCGCCg -3' miRNA: 3'- gaCGACUGCGacaaGUC--GCGG-------CGCGG- -5' |
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26031 | 5' | -58.2 | NC_005342.2 | + | 27055 | 0.66 | 0.49307 |
Target: 5'- cCUGC--GCGCcaaGUagCAcGCGCUGCGCCg -3' miRNA: 3'- -GACGacUGCGa--CAa-GU-CGCGGCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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