miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26031 5' -58.2 NC_005342.2 + 42909 1 0.001932
Target:  5'- cCUGCU-ACGCUGUUCAGCGCCGCGCCg -3'
miRNA:   3'- -GACGAcUGCGACAAGUCGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 12152 0.84 0.030309
Target:  5'- -gGCUGGCGCg---CAGCGCCGCGUCa -3'
miRNA:   3'- gaCGACUGCGacaaGUCGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 19712 0.77 0.105916
Target:  5'- gUGCUcGGCGCUGguggcgugcaagaCGGCGCCGCuGCCg -3'
miRNA:   3'- gACGA-CUGCGACaa-----------GUCGCGGCG-CGG- -5'
26031 5' -58.2 NC_005342.2 + 32067 0.76 0.117161
Target:  5'- -cGCUGcccgauagcguGCGCagcacgacGUUCAGCGCCGCGUCg -3'
miRNA:   3'- gaCGAC-----------UGCGa-------CAAGUCGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 46619 0.75 0.142271
Target:  5'- cCUGCUGuucAUGCUG--CAGCGCCgcgaGCGCCg -3'
miRNA:   3'- -GACGAC---UGCGACaaGUCGCGG----CGCGG- -5'
26031 5' -58.2 NC_005342.2 + 3175 0.75 0.146238
Target:  5'- uUGCccgGGCGCggccgcgcggUGUUCAGCGUcugCGCGCCg -3'
miRNA:   3'- gACGa--CUGCG----------ACAAGUCGCG---GCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 41378 0.75 0.146238
Target:  5'- aCUGC-GGCGCUG---GGCGgCGCGCCg -3'
miRNA:   3'- -GACGaCUGCGACaagUCGCgGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 25265 0.74 0.154474
Target:  5'- cCUGCUGAUagauuuucaGCgUGUUCGGCGUCGCaaccggGCCg -3'
miRNA:   3'- -GACGACUG---------CG-ACAAGUCGCGGCG------CGG- -5'
26031 5' -58.2 NC_005342.2 + 32697 0.74 0.154474
Target:  5'- gUGCUGAUGCUGacC-GCGCCGcCGCa -3'
miRNA:   3'- gACGACUGCGACaaGuCGCGGC-GCGg -5'
26031 5' -58.2 NC_005342.2 + 32145 0.74 0.162685
Target:  5'- -cGCUGACGagUGUcucguacUCGGCGCCcuucaGCGCCg -3'
miRNA:   3'- gaCGACUGCg-ACA-------AGUCGCGG-----CGCGG- -5'
26031 5' -58.2 NC_005342.2 + 44899 0.74 0.167617
Target:  5'- uUGCUGAUGCgcgcggCAGCuguuCCGCGCCa -3'
miRNA:   3'- gACGACUGCGacaa--GUCGc---GGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 35304 0.73 0.176928
Target:  5'- -aGUUGuCGCUGUUCGGCGCgGuCGaCCc -3'
miRNA:   3'- gaCGACuGCGACAAGUCGCGgC-GC-GG- -5'
26031 5' -58.2 NC_005342.2 + 15943 0.73 0.181754
Target:  5'- cCUGCUGACGCacgUCGacaucgccGCGacCCGCGCCa -3'
miRNA:   3'- -GACGACUGCGacaAGU--------CGC--GGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 17028 0.73 0.186696
Target:  5'- aUGCUcGCGgUGUUCca-GCCGCGCCg -3'
miRNA:   3'- gACGAcUGCgACAAGucgCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 2031 0.73 0.202238
Target:  5'- -cGcCUGGCGCUGaucCGGCGCgagaCGCGCCc -3'
miRNA:   3'- gaC-GACUGCGACaa-GUCGCG----GCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 3477 0.73 0.202238
Target:  5'- -cGUUGACGaUGUUCAGCuGCUGCGgCu -3'
miRNA:   3'- gaCGACUGCgACAAGUCG-CGGCGCgG- -5'
26031 5' -58.2 NC_005342.2 + 14807 0.72 0.213213
Target:  5'- aUGCUGccggacuCGCggcuacgGUUCGGCgcgcagucGCCGCGCCg -3'
miRNA:   3'- gACGACu------GCGa------CAAGUCG--------CGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 44767 0.72 0.230633
Target:  5'- -cGCaGACGCUGaaCAccgcGCgGCCGCGCCc -3'
miRNA:   3'- gaCGaCUGCGACaaGU----CG-CGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 19495 0.72 0.230633
Target:  5'- -cGCUGGCGCgcuggCGGCGCuCGUgGCCg -3'
miRNA:   3'- gaCGACUGCGacaa-GUCGCG-GCG-CGG- -5'
26031 5' -58.2 NC_005342.2 + 23282 0.71 0.249238
Target:  5'- aUGCa---GCUGaUCGGCGCCGCGUa -3'
miRNA:   3'- gACGacugCGACaAGUCGCGGCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.