miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26031 5' -58.2 NC_005342.2 + 19712 0.77 0.105916
Target:  5'- gUGCUcGGCGCUGguggcgugcaagaCGGCGCCGCuGCCg -3'
miRNA:   3'- gACGA-CUGCGACaa-----------GUCGCGGCG-CGG- -5'
26031 5' -58.2 NC_005342.2 + 35794 0.7 0.3125
Target:  5'- -aGCUGGC-CcGUgacgCGGCGCUGCGCg -3'
miRNA:   3'- gaCGACUGcGaCAa---GUCGCGGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 8606 0.69 0.336135
Target:  5'- aUGCgcGACGUcgaGcUCGGCGCgGCGCCc -3'
miRNA:   3'- gACGa-CUGCGa--CaAGUCGCGgCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 44565 0.66 0.524227
Target:  5'- -cGCgaGACGCUGaagaAGauCGCCGCGCg -3'
miRNA:   3'- gaCGa-CUGCGACaag-UC--GCGGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 32145 0.74 0.162685
Target:  5'- -cGCUGACGagUGUcucguacUCGGCGCCcuucaGCGCCg -3'
miRNA:   3'- gaCGACUGCg-ACA-------AGUCGCGG-----CGCGG- -5'
26031 5' -58.2 NC_005342.2 + 44899 0.74 0.167617
Target:  5'- uUGCUGAUGCgcgcggCAGCuguuCCGCGCCa -3'
miRNA:   3'- gACGACUGCGacaa--GUCGc---GGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 3477 0.73 0.202238
Target:  5'- -cGUUGACGaUGUUCAGCuGCUGCGgCu -3'
miRNA:   3'- gaCGACUGCgACAAGUCG-CGGCGCgG- -5'
26031 5' -58.2 NC_005342.2 + 19495 0.72 0.230633
Target:  5'- -cGCUGGCGCgcuggCGGCGCuCGUgGCCg -3'
miRNA:   3'- gaCGACUGCGacaa-GUCGCG-GCG-CGG- -5'
26031 5' -58.2 NC_005342.2 + 19397 0.7 0.287981
Target:  5'- uCUGCUGAUGCgcuaugccuaCGCCGCGCUa -3'
miRNA:   3'- -GACGACUGCGacaaguc---GCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 5027 0.7 0.304906
Target:  5'- gCUGUUGGC-CgacgUCGGCGCgGCGCUg -3'
miRNA:   3'- -GACGACUGcGaca-AGUCGCGgCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 31310 0.7 0.290146
Target:  5'- uUGCcGACGUUGauaAGCGCCGUcucgGCCg -3'
miRNA:   3'- gACGaCUGCGACaagUCGCGGCG----CGG- -5'
26031 5' -58.2 NC_005342.2 + 11262 0.71 0.262319
Target:  5'- uUGCcGcGCGCUGUUgAacuGCGCCGuCGCCu -3'
miRNA:   3'- gACGaC-UGCGACAAgU---CGCGGC-GCGG- -5'
26031 5' -58.2 NC_005342.2 + 32067 0.76 0.117161
Target:  5'- -cGCUGcccgauagcguGCGCagcacgacGUUCAGCGCCGCGUCg -3'
miRNA:   3'- gaCGAC-----------UGCGa-------CAAGUCGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 28642 0.7 0.297455
Target:  5'- uUGCcGuCGgUGcgCAGCGgCGCGCCg -3'
miRNA:   3'- gACGaCuGCgACaaGUCGCgGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 46619 0.75 0.142271
Target:  5'- cCUGCUGuucAUGCUG--CAGCGCCgcgaGCGCCg -3'
miRNA:   3'- -GACGAC---UGCGACaaGUCGCGG----CGCGG- -5'
26031 5' -58.2 NC_005342.2 + 44767 0.72 0.230633
Target:  5'- -cGCaGACGCUGaaCAccgcGCgGCCGCGCCc -3'
miRNA:   3'- gaCGaCUGCGACaaGU----CG-CGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 40375 0.7 0.297455
Target:  5'- -gGCcGACGaaCUGUUCGGCGCacuCGCGaCCg -3'
miRNA:   3'- gaCGaCUGC--GACAAGUCGCG---GCGC-GG- -5'
26031 5' -58.2 NC_005342.2 + 13818 0.69 0.336135
Target:  5'- -gGCgacgGGCGCcGcgUCGagcgcauugagcGCGCCGCGCCg -3'
miRNA:   3'- gaCGa---CUGCGaCa-AGU------------CGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 25265 0.74 0.154474
Target:  5'- cCUGCUGAUagauuuucaGCgUGUUCGGCGUCGCaaccggGCCg -3'
miRNA:   3'- -GACGACUG---------CG-ACAAGUCGCGGCG------CGG- -5'
26031 5' -58.2 NC_005342.2 + 17028 0.73 0.186696
Target:  5'- aUGCUcGCGgUGUUCca-GCCGCGCCg -3'
miRNA:   3'- gACGAcUGCgACAAGucgCGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.