miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26031 5' -58.2 NC_005342.2 + 718 0.7 0.290146
Target:  5'- -gGCcGGCGCcucGUUCAGCGCgGCagucGCCg -3'
miRNA:   3'- gaCGaCUGCGa--CAAGUCGCGgCG----CGG- -5'
26031 5' -58.2 NC_005342.2 + 1078 0.68 0.369634
Target:  5'- -gGCgcACGCUG--CGGCGgCGCGCCa -3'
miRNA:   3'- gaCGacUGCGACaaGUCGCgGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 1093 0.66 0.482872
Target:  5'- -cGC--GCGCgaagUCGGUGCCGUGCUg -3'
miRNA:   3'- gaCGacUGCGaca-AGUCGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 1309 0.67 0.462791
Target:  5'- gCUGCgcgcGAUGCUucgCGGCGCuCGCGgCg -3'
miRNA:   3'- -GACGa---CUGCGAcaaGUCGCG-GCGCgG- -5'
26031 5' -58.2 NC_005342.2 + 2031 0.73 0.202238
Target:  5'- -cGcCUGGCGCUGaucCGGCGCgagaCGCGCCc -3'
miRNA:   3'- gaC-GACUGCGACaa-GUCGCG----GCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 2869 0.66 0.513753
Target:  5'- -gGCUGAUGUUGgcagagacGUGCUGCGCg -3'
miRNA:   3'- gaCGACUGCGACaagu----CGCGGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 3175 0.75 0.146238
Target:  5'- uUGCccgGGCGCggccgcgcggUGUUCAGCGUcugCGCGCCg -3'
miRNA:   3'- gACGa--CUGCG----------ACAAGUCGCG---GCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 3477 0.73 0.202238
Target:  5'- -cGUUGACGaUGUUCAGCuGCUGCGgCu -3'
miRNA:   3'- gaCGACUGCgACAAGUCG-CGGCGCgG- -5'
26031 5' -58.2 NC_005342.2 + 3961 0.66 0.49307
Target:  5'- aUGUUGGCgGC-GUUUAGCuGCUGCGUg -3'
miRNA:   3'- gACGACUG-CGaCAAGUCG-CGGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 4201 0.66 0.513753
Target:  5'- -cGUUGACGCUcgagaacaUCGGCgugaggauGCCGCGCa -3'
miRNA:   3'- gaCGACUGCGAca------AGUCG--------CGGCGCGg -5'
26031 5' -58.2 NC_005342.2 + 4819 0.68 0.396216
Target:  5'- -gGCUGAC-CguacgCGcGCGCCGUGCCg -3'
miRNA:   3'- gaCGACUGcGacaa-GU-CGCGGCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 4859 0.67 0.423999
Target:  5'- -cGCUGaccauguagcgcGCGCUGcgauaguGCGCCGuCGCCa -3'
miRNA:   3'- gaCGAC------------UGCGACaagu---CGCGGC-GCGG- -5'
26031 5' -58.2 NC_005342.2 + 5027 0.7 0.304906
Target:  5'- gCUGUUGGC-CgacgUCGGCGCgGCGCUg -3'
miRNA:   3'- -GACGACUGcGaca-AGUCGCGgCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 6082 0.68 0.414608
Target:  5'- aUGCgagGACGCUGUugcccUCgGGCGUgaGCGUCa -3'
miRNA:   3'- gACGa--CUGCGACA-----AG-UCGCGg-CGCGG- -5'
26031 5' -58.2 NC_005342.2 + 8606 0.69 0.336135
Target:  5'- aUGCgcGACGUcgaGcUCGGCGCgGCGCCc -3'
miRNA:   3'- gACGa-CUGCGa--CaAGUCGCGgCGCGG- -5'
26031 5' -58.2 NC_005342.2 + 8897 0.68 0.378358
Target:  5'- aUGCgcGACGCggcuucGUUC-GCGCCgGCGCUg -3'
miRNA:   3'- gACGa-CUGCGa-----CAAGuCGCGG-CGCGG- -5'
26031 5' -58.2 NC_005342.2 + 9074 0.66 0.503365
Target:  5'- -gGCUuGCGCUGUcaAGCGCaauGuCGCCg -3'
miRNA:   3'- gaCGAcUGCGACAagUCGCGg--C-GCGG- -5'
26031 5' -58.2 NC_005342.2 + 9510 0.7 0.290146
Target:  5'- uUGCUcGACgaGCUGcUUCAGCGCgGCaCCa -3'
miRNA:   3'- gACGA-CUG--CGAC-AAGUCGCGgCGcGG- -5'
26031 5' -58.2 NC_005342.2 + 9542 0.67 0.423055
Target:  5'- -cGCcGGCgGCUGcgggaauUUCAGCGCgGCgGCCa -3'
miRNA:   3'- gaCGaCUG-CGAC-------AAGUCGCGgCG-CGG- -5'
26031 5' -58.2 NC_005342.2 + 10971 0.66 0.524227
Target:  5'- ----cGACGUcGUcggaaagAGCGCCGCGCCg -3'
miRNA:   3'- gacgaCUGCGaCAag-----UCGCGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.