miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26033 5' -62.5 NC_005342.2 + 22437 0.66 0.331404
Target:  5'- aGCggCGCGuaCCAGGaCG-CGCuCGGCCGCa -3'
miRNA:   3'- -UGa-GCGC--GGUUCgGCaGCG-GCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 8603 0.66 0.294091
Target:  5'- gUUCGCGUCcGGCagcaGUCGGCCGCu -3'
miRNA:   3'- uGAGCGCGGuUCGgcagCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 14216 0.66 0.294091
Target:  5'- uGCgcgCGCGCCucuuucGAGCCGagCGgCGGCaCGCc -3'
miRNA:   3'- -UGa--GCGCGG------UUCGGCa-GCgGCCG-GUG- -5'
26033 5' -62.5 NC_005342.2 + 28482 0.66 0.331404
Target:  5'- cGC-CGCGUCGA-CCG-CGCgGGUCGCg -3'
miRNA:   3'- -UGaGCGCGGUUcGGCaGCGgCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 31866 0.66 0.294091
Target:  5'- --aCGCGgCGA-CUGUCggcagGCCGGCCACg -3'
miRNA:   3'- ugaGCGCgGUUcGGCAG-----CGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 37852 0.66 0.301283
Target:  5'- cUUCGCGUuCGAcGCCGaC-CCGGCCGCc -3'
miRNA:   3'- uGAGCGCG-GUU-CGGCaGcGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 1094 0.66 0.30861
Target:  5'- --gCGCGCgAAGUCGgUGCCGuGCUGCg -3'
miRNA:   3'- ugaGCGCGgUUCGGCaGCGGC-CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 36019 0.66 0.30861
Target:  5'- --aCGCGCCGcccgAGuaGUCGCCGGgCGu -3'
miRNA:   3'- ugaGCGCGGU----UCggCAGCGGCCgGUg -5'
26033 5' -62.5 NC_005342.2 + 45624 0.66 0.316073
Target:  5'- uGCUCGagguGCUu-GCCGa-GCUGGCCGCg -3'
miRNA:   3'- -UGAGCg---CGGuuCGGCagCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 9832 0.66 0.294091
Target:  5'- uCUCGauCGCCGucuugaccguGGCCGgcgucaCGCCGGCgCACc -3'
miRNA:   3'- uGAGC--GCGGU----------UCGGCa-----GCGGCCG-GUG- -5'
26033 5' -62.5 NC_005342.2 + 39752 0.66 0.294091
Target:  5'- cCUCGCG-CGGGCCGgCGUCauccuGCCACg -3'
miRNA:   3'- uGAGCGCgGUUCGGCaGCGGc----CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 22839 0.66 0.301283
Target:  5'- aACgugCGCGCC--GCCGugcUCGCCGuGCC-Cg -3'
miRNA:   3'- -UGa--GCGCGGuuCGGC---AGCGGC-CGGuG- -5'
26033 5' -62.5 NC_005342.2 + 36106 0.66 0.331404
Target:  5'- uGCUCGCGCCcgucucGGCCGa--CCGGCagACg -3'
miRNA:   3'- -UGAGCGCGGu-----UCGGCagcGGCCGg-UG- -5'
26033 5' -62.5 NC_005342.2 + 33751 0.66 0.323671
Target:  5'- gGCgCGCGCgCAcGCCGUCGCaugGGUCu- -3'
miRNA:   3'- -UGaGCGCG-GUuCGGCAGCGg--CCGGug -5'
26033 5' -62.5 NC_005342.2 + 19177 0.66 0.323671
Target:  5'- ---aGCGCCAGGUCGgcgcgaUCGUgGGCgGCg -3'
miRNA:   3'- ugagCGCGGUUCGGC------AGCGgCCGgUG- -5'
26033 5' -62.5 NC_005342.2 + 36157 0.66 0.316073
Target:  5'- aGCUggaGCGC---GCCGUCGCgcugaUGGCCGCg -3'
miRNA:   3'- -UGAg--CGCGguuCGGCAGCG-----GCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 4900 0.66 0.316073
Target:  5'- cGCUCGUucuGCCAgauGGCCGUCaugauuuCCGGCguCg -3'
miRNA:   3'- -UGAGCG---CGGU---UCGGCAGc------GGCCGguG- -5'
26033 5' -62.5 NC_005342.2 + 17283 0.66 0.30861
Target:  5'- -gUCGCGCCugacGGCCGccggcguaUCGCCGGaCGu -3'
miRNA:   3'- ugAGCGCGGu---UCGGC--------AGCGGCCgGUg -5'
26033 5' -62.5 NC_005342.2 + 35593 0.66 0.30861
Target:  5'- cACUggCGCGCCGGGCgGggCGCgGGCgGg -3'
miRNA:   3'- -UGA--GCGCGGUUCGgCa-GCGgCCGgUg -5'
26033 5' -62.5 NC_005342.2 + 2805 0.66 0.30861
Target:  5'- uGCUCGCGaaugcGCCGUCGgC-GCCGCc -3'
miRNA:   3'- -UGAGCGCgguu-CGGCAGCgGcCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.