miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26033 5' -62.5 NC_005342.2 + 36546 0.79 0.036698
Target:  5'- --gCGCGCUAcGGCCaUCGCCGGCCGCu -3'
miRNA:   3'- ugaGCGCGGU-UCGGcAGCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 30398 0.7 0.177219
Target:  5'- gUUCGCGCC--GCCGcCGgCGGCgGCa -3'
miRNA:   3'- uGAGCGCGGuuCGGCaGCgGCCGgUG- -5'
26033 5' -62.5 NC_005342.2 + 11818 0.69 0.181925
Target:  5'- aGCUUGCGCCGGuacaucgcuuCCGUCuGCCGGUCGg -3'
miRNA:   3'- -UGAGCGCGGUUc---------GGCAG-CGGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 28482 0.66 0.331404
Target:  5'- cGC-CGCGUCGA-CCG-CGCgGGUCGCg -3'
miRNA:   3'- -UGaGCGCGGUUcGGCaGCGgCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 43021 0.74 0.085332
Target:  5'- cGCUCGUGCCGaucgAGCCGaCGCCggaaaucaugacGGCCAUc -3'
miRNA:   3'- -UGAGCGCGGU----UCGGCaGCGG------------CCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 7802 0.74 0.087728
Target:  5'- aGCUCGCucGCCAgaucgacgcGGCCuG-CGCCGGCCAUu -3'
miRNA:   3'- -UGAGCG--CGGU---------UCGG-CaGCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 40919 0.73 0.103499
Target:  5'- gACUCGUGCgCGAGggcuacCUGUCGCCGGUCGu -3'
miRNA:   3'- -UGAGCGCG-GUUC------GGCAGCGGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 13508 0.72 0.109325
Target:  5'- uGCUCGCGgCGuuGCCGcCGgCGGCCAg -3'
miRNA:   3'- -UGAGCGCgGUu-CGGCaGCgGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 38103 0.71 0.13583
Target:  5'- --gUGCGCC-GGCgUGaCGCCGGCCACg -3'
miRNA:   3'- ugaGCGCGGuUCG-GCaGCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 20513 0.7 0.16813
Target:  5'- gGC-CGcCGCCGcGCCGuUCGCUGGCgGCc -3'
miRNA:   3'- -UGaGC-GCGGUuCGGC-AGCGGCCGgUG- -5'
26033 5' -62.5 NC_005342.2 + 29905 0.71 0.142178
Target:  5'- gACUCGCGCaCGccguuugccgugauAGCCGcCGCCGaucgaucgacgcGCCGCg -3'
miRNA:   3'- -UGAGCGCG-GU--------------UCGGCaGCGGC------------CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 39512 0.71 0.134375
Target:  5'- cGCUCGCGCUGuGGCCGUCcgaacgcgcauacCCGGCUGCc -3'
miRNA:   3'- -UGAGCGCGGU-UCGGCAGc------------GGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 16969 0.76 0.064573
Target:  5'- aACUCGCGgCAuacGCCGUCGCCGcGCUcgACu -3'
miRNA:   3'- -UGAGCGCgGUu--CGGCAGCGGC-CGG--UG- -5'
26033 5' -62.5 NC_005342.2 + 32464 0.71 0.151198
Target:  5'- --aCGCGCaggucGCUGcCGCCGGCCAUa -3'
miRNA:   3'- ugaGCGCGguu--CGGCaGCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 12147 0.75 0.068484
Target:  5'- uCUCGCGCCGAGCCGcuucuuccggcgucUCauugccuucgaccuuGCCGGCCGg -3'
miRNA:   3'- uGAGCGCGGUUCGGC--------------AG---------------CGGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 7908 0.72 0.117679
Target:  5'- uAUUCGCGCC--GCUGUCGCCGucggacgaguagucGCCAUa -3'
miRNA:   3'- -UGAGCGCGGuuCGGCAGCGGC--------------CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 22261 0.7 0.159462
Target:  5'- cGCUCuGCGCCAAGCCagcccgagaCGCCGaCCAUg -3'
miRNA:   3'- -UGAG-CGCGGUUCGGca-------GCGGCcGGUG- -5'
26033 5' -62.5 NC_005342.2 + 26705 0.69 0.181925
Target:  5'- -gUCGaUGCCc-GCCG-CGCCGGCCAg -3'
miRNA:   3'- ugAGC-GCGGuuCGGCaGCGGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 30843 0.75 0.071615
Target:  5'- uGCUCGCGCgCGAGCCcggcgaacgcGUCGCCGccugccuuggcgucGCCGCc -3'
miRNA:   3'- -UGAGCGCG-GUUCGG----------CAGCGGC--------------CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 25291 0.73 0.092713
Target:  5'- gGCgUCGCaaCCGGGCCGaCGCCGGCgACg -3'
miRNA:   3'- -UG-AGCGc-GGUUCGGCaGCGGCCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.