miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26033 5' -62.5 NC_005342.2 + 42436 1.09 0.000166
Target:  5'- cACUCGCGCCAAGCCGUCGCCGGCCACg -3'
miRNA:   3'- -UGAGCGCGGUUCGGCAGCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 36546 0.79 0.036698
Target:  5'- --gCGCGCUAcGGCCaUCGCCGGCCGCu -3'
miRNA:   3'- ugaGCGCGGU-UCGGcAGCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 16969 0.76 0.064573
Target:  5'- aACUCGCGgCAuacGCCGUCGCCGcGCUcgACu -3'
miRNA:   3'- -UGAGCGCgGUu--CGGCAGCGGC-CGG--UG- -5'
26033 5' -62.5 NC_005342.2 + 12147 0.75 0.068484
Target:  5'- uCUCGCGCCGAGCCGcuucuuccggcgucUCauugccuucgaccuuGCCGGCCGg -3'
miRNA:   3'- uGAGCGCGGUUCGGC--------------AG---------------CGGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 30843 0.75 0.071615
Target:  5'- uGCUCGCGCgCGAGCCcggcgaacgcGUCGCCGccugccuuggcgucGCCGCc -3'
miRNA:   3'- -UGAGCGCG-GUUCGG----------CAGCGGC--------------CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 34012 0.75 0.07426
Target:  5'- aGCUCGCGCgCAccGGCCGccggcccgaagUCGCCaaggcGGCCGCg -3'
miRNA:   3'- -UGAGCGCG-GU--UCGGC-----------AGCGG-----CCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 44777 0.74 0.080726
Target:  5'- gGCggCGCGCCGGGCCGgcUCaCCGGCCuCg -3'
miRNA:   3'- -UGa-GCGCGGUUCGGC--AGcGGCCGGuG- -5'
26033 5' -62.5 NC_005342.2 + 42926 0.74 0.080726
Target:  5'- cGC-CGCGCCGAcGUCGgccaacaGCCGGCCGCc -3'
miRNA:   3'- -UGaGCGCGGUU-CGGCag-----CGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 45659 0.74 0.080726
Target:  5'- uGCUCGCGUUccGCCaGUucaacgcgggcgUGCCGGCCACg -3'
miRNA:   3'- -UGAGCGCGGuuCGG-CA------------GCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 43021 0.74 0.085332
Target:  5'- cGCUCGUGCCGaucgAGCCGaCGCCggaaaucaugacGGCCAUc -3'
miRNA:   3'- -UGAGCGCGGU----UCGGCaGCGG------------CCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 7802 0.74 0.087728
Target:  5'- aGCUCGCucGCCAgaucgacgcGGCCuG-CGCCGGCCAUu -3'
miRNA:   3'- -UGAGCG--CGGU---------UCGG-CaGCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 25074 0.73 0.092457
Target:  5'- uGCUCgucacgaGCGCCAGuacgaucgcGCCGaUCGCCGGgCCGCg -3'
miRNA:   3'- -UGAG-------CGCGGUU---------CGGC-AGCGGCC-GGUG- -5'
26033 5' -62.5 NC_005342.2 + 25291 0.73 0.092713
Target:  5'- gGCgUCGCaaCCGGGCCGaCGCCGGCgACg -3'
miRNA:   3'- -UG-AGCGc-GGUUCGGCaGCGGCCGgUG- -5'
26033 5' -62.5 NC_005342.2 + 27075 0.73 0.100696
Target:  5'- cGCU-GCGCCGGGCuUGUCGCCGcCCAUa -3'
miRNA:   3'- -UGAgCGCGGUUCG-GCAGCGGCcGGUG- -5'
26033 5' -62.5 NC_005342.2 + 29358 0.73 0.103499
Target:  5'- cGCcCGCGCCu-GCCG-CGCCGGUCGu -3'
miRNA:   3'- -UGaGCGCGGuuCGGCaGCGGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 40919 0.73 0.103499
Target:  5'- gACUCGUGCgCGAGggcuacCUGUCGCCGGUCGu -3'
miRNA:   3'- -UGAGCGCG-GUUC------GGCAGCGGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 22633 0.73 0.106083
Target:  5'- --aCGCGaCCGuuacguacgucgcGGCCGUCGCCGGCguCg -3'
miRNA:   3'- ugaGCGC-GGU-------------UCGGCAGCGGCCGguG- -5'
26033 5' -62.5 NC_005342.2 + 13508 0.72 0.109325
Target:  5'- uGCUCGCGgCGuuGCCGcCGgCGGCCAg -3'
miRNA:   3'- -UGAGCGCgGUu-CGGCaGCgGCCGGUg -5'
26033 5' -62.5 NC_005342.2 + 7908 0.72 0.117679
Target:  5'- uAUUCGCGCC--GCUGUCGCCGucggacgaguagucGCCAUa -3'
miRNA:   3'- -UGAGCGCGGuuCGGCAGCGGC--------------CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 14816 0.71 0.132219
Target:  5'- gACUCGCgGCUAcgguucGGCgcgcaGUCGCCGcGCCGCa -3'
miRNA:   3'- -UGAGCG-CGGU------UCGg----CAGCGGC-CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.