miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26033 5' -62.5 NC_005342.2 + 189 0.67 0.259489
Target:  5'- gGCUUGCGCCAuaaaugugcgucgGGUCGccccaCGCCGuGCCGu -3'
miRNA:   3'- -UGAGCGCGGU-------------UCGGCa----GCGGC-CGGUg -5'
26033 5' -62.5 NC_005342.2 + 1094 0.66 0.30861
Target:  5'- --gCGCGCgAAGUCGgUGCCGuGCUGCg -3'
miRNA:   3'- ugaGCGCGgUUCGGCaGCGGC-CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 1851 0.67 0.258202
Target:  5'- --gCGCGCCuGGCCcggauuggcgggGUCGCCGaucaggaaguaccaGCCACg -3'
miRNA:   3'- ugaGCGCGGuUCGG------------CAGCGGC--------------CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 1979 0.66 0.316073
Target:  5'- cGCcCGCGCgGAugauGCCGaCGUcaCGGCCGCg -3'
miRNA:   3'- -UGaGCGCGgUU----CGGCaGCG--GCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 2270 0.67 0.266661
Target:  5'- -gUCGUGC---GCCGUgGCCGGCaCGCc -3'
miRNA:   3'- ugAGCGCGguuCGGCAgCGGCCG-GUG- -5'
26033 5' -62.5 NC_005342.2 + 2369 0.69 0.196711
Target:  5'- gACg-GCGCC-GGCgGUCGCCuGGUCGCc -3'
miRNA:   3'- -UGagCGCGGuUCGgCAGCGG-CCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 2661 0.68 0.246854
Target:  5'- aGCgUCGCGCCGgcggcggccgacaGGCCGagcUCGUCGGCgAg -3'
miRNA:   3'- -UG-AGCGCGGU-------------UCGGC---AGCGGCCGgUg -5'
26033 5' -62.5 NC_005342.2 + 2708 0.66 0.324438
Target:  5'- gUUCGUGCCcgucacGGCCGagauugcggccgccgUGCCGGUCGCg -3'
miRNA:   3'- uGAGCGCGGu-----UCGGCa--------------GCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 2805 0.66 0.30861
Target:  5'- uGCUCGCGaaugcGCCGUCGgC-GCCGCc -3'
miRNA:   3'- -UGAGCGCgguu-CGGCAGCgGcCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 4413 0.67 0.273318
Target:  5'- --cCGCGUu--GuuGUCuGCCGGCCACu -3'
miRNA:   3'- ugaGCGCGguuCggCAG-CGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 4709 0.69 0.196711
Target:  5'- -gUCGCGCCcgcGAGCa--CGCCGGCCu- -3'
miRNA:   3'- ugAGCGCGG---UUCGgcaGCGGCCGGug -5'
26033 5' -62.5 NC_005342.2 + 4830 0.71 0.139532
Target:  5'- cGCgCGCGCCGuGCCGaUGCCGcuGCCGCc -3'
miRNA:   3'- -UGaGCGCGGUuCGGCaGCGGC--CGGUG- -5'
26033 5' -62.5 NC_005342.2 + 4900 0.66 0.316073
Target:  5'- cGCUCGUucuGCCAgauGGCCGUCaugauuuCCGGCguCg -3'
miRNA:   3'- -UGAGCG---CGGU---UCGGCAGc------GGCCGguG- -5'
26033 5' -62.5 NC_005342.2 + 5492 0.68 0.235327
Target:  5'- cUUCGCggggauauagGUCAuGCCGUgGCCGGCgACg -3'
miRNA:   3'- uGAGCG----------CGGUuCGGCAgCGGCCGgUG- -5'
26033 5' -62.5 NC_005342.2 + 6414 0.68 0.241337
Target:  5'- cGCUCGCgGCCGGgcGCCGUCGUgccguCGGgCAg -3'
miRNA:   3'- -UGAGCG-CGGUU--CGGCAGCG-----GCCgGUg -5'
26033 5' -62.5 NC_005342.2 + 6534 0.69 0.196202
Target:  5'- -aUCGCGCCGuGCCGcccgaagUUGCCGcCCGCg -3'
miRNA:   3'- ugAGCGCGGUuCGGC-------AGCGGCcGGUG- -5'
26033 5' -62.5 NC_005342.2 + 6770 0.67 0.253739
Target:  5'- gACagCGCGCCGAucuucGCCuGUCGCaaCGGCgGCa -3'
miRNA:   3'- -UGa-GCGCGGUU-----CGG-CAGCG--GCCGgUG- -5'
26033 5' -62.5 NC_005342.2 + 7576 0.67 0.266661
Target:  5'- cGCgagUGCGCCGaacAGU--UCGUCGGCCGCu -3'
miRNA:   3'- -UGa--GCGCGGU---UCGgcAGCGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 7708 0.68 0.247474
Target:  5'- -aUCGuUGaUCAGGCCGUaguucucgagGCCGGCCACg -3'
miRNA:   3'- ugAGC-GC-GGUUCGGCAg---------CGGCCGGUG- -5'
26033 5' -62.5 NC_005342.2 + 7802 0.74 0.087728
Target:  5'- aGCUCGCucGCCAgaucgacgcGGCCuG-CGCCGGCCAUu -3'
miRNA:   3'- -UGAGCG--CGGU---------UCGG-CaGCGGCCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.