miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26035 5' -58.9 NC_005342.2 + 19330 0.7 0.269066
Target:  5'- aCGGCaaguacGCGcCGGCCUg-CGCCgAGCGCGa -3'
miRNA:   3'- -GCCGa-----CGC-GUCGGAaaGUGG-UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 1291 0.68 0.352603
Target:  5'- uCGGCgcGCGCcGCCUUggCugC-GCGCGa -3'
miRNA:   3'- -GCCGa-CGCGuCGGAAa-GugGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 19260 0.68 0.344298
Target:  5'- gCGGCcGCGCAGCUgaUUGCCGcguucgaccGCGUGa -3'
miRNA:   3'- -GCCGaCGCGUCGGaaAGUGGU---------CGCGC- -5'
26035 5' -58.9 NC_005342.2 + 36685 0.68 0.344298
Target:  5'- aGGCgacgGCGCAGU---UCAaCAGCGCGc -3'
miRNA:   3'- gCCGa---CGCGUCGgaaAGUgGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 3203 0.68 0.328114
Target:  5'- gCGuCUGCGC-GCCgccagCGCCAcGCGCGg -3'
miRNA:   3'- -GCcGACGCGuCGGaaa--GUGGU-CGCGC- -5'
26035 5' -58.9 NC_005342.2 + 27470 0.69 0.297455
Target:  5'- gCGGUUGCGCGGCagc-CGCCGGgaCGCu -3'
miRNA:   3'- -GCCGACGCGUCGgaaaGUGGUC--GCGc -5'
26035 5' -58.9 NC_005342.2 + 41310 0.69 0.282979
Target:  5'- gCGGCggaUGCGC-GCCUgcucgagcgCGCCgAGCGCGc -3'
miRNA:   3'- -GCCG---ACGCGuCGGAaa-------GUGG-UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 38354 0.69 0.282979
Target:  5'- aGGC-GCGCcGCCggcaGCCGGUGCGc -3'
miRNA:   3'- gCCGaCGCGuCGGaaagUGGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 795 0.7 0.275952
Target:  5'- gCGGC-GaCGUAGCUgcggUCGCCuGCGCGu -3'
miRNA:   3'- -GCCGaC-GCGUCGGaa--AGUGGuCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 38560 0.68 0.361049
Target:  5'- aCGGCgUGCGCAGCC---CGCagGGCaGCGa -3'
miRNA:   3'- -GCCG-ACGCGUCGGaaaGUGg-UCG-CGC- -5'
26035 5' -58.9 NC_005342.2 + 21100 0.68 0.369634
Target:  5'- gGGCU-CGCAGUg-UUUGCCgAGCGCGa -3'
miRNA:   3'- gCCGAcGCGUCGgaAAGUGG-UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 40120 0.67 0.387219
Target:  5'- gGGCgaGCGCgAGCUggaaaUgGCCGGCGCa -3'
miRNA:   3'- gCCGa-CGCG-UCGGaa---AgUGGUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 29906 0.66 0.472778
Target:  5'- uCGGCUuGUGCAGCggcg-GgCAGCGCGa -3'
miRNA:   3'- -GCCGA-CGCGUCGgaaagUgGUCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 33597 0.66 0.451934
Target:  5'- uGGCgaccGCGCAGgCgaUCGCCgaccugaAGCGCa -3'
miRNA:   3'- gCCGa---CGCGUCgGaaAGUGG-------UCGCGc -5'
26035 5' -58.9 NC_005342.2 + 44778 0.66 0.433516
Target:  5'- gCGGC-GCGCcgGGCCggcUCACCGGCc-- -3'
miRNA:   3'- -GCCGaCGCG--UCGGaa-AGUGGUCGcgc -5'
26035 5' -58.9 NC_005342.2 + 30883 0.67 0.414608
Target:  5'- uCGGCUGacagguagaccuUGUGGCCcggUUCGCCgauguuccGGCGCGg -3'
miRNA:   3'- -GCCGAC------------GCGUCGGa--AAGUGG--------UCGCGC- -5'
26035 5' -58.9 NC_005342.2 + 14622 0.67 0.414608
Target:  5'- aCGGCUGCGCAGUUUg---UgAGCGUa -3'
miRNA:   3'- -GCCGACGCGUCGGAaaguGgUCGCGc -5'
26035 5' -58.9 NC_005342.2 + 605 0.67 0.414608
Target:  5'- uCGGCgacGCGCAGCUgaaugaaCGCCuGCGgGu -3'
miRNA:   3'- -GCCGa--CGCGUCGGaaa----GUGGuCGCgC- -5'
26035 5' -58.9 NC_005342.2 + 28327 0.67 0.405347
Target:  5'- aCGGCcaGCGuCGGCCgcgcUCGCC-GCGCu -3'
miRNA:   3'- -GCCGa-CGC-GUCGGaa--AGUGGuCGCGc -5'
26035 5' -58.9 NC_005342.2 + 21888 0.67 0.396216
Target:  5'- cCGGaaGCGCcGCCg--CugCGGCGCc -3'
miRNA:   3'- -GCCgaCGCGuCGGaaaGugGUCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.