miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26036 5' -53.9 NC_005342.2 + 6992 0.66 0.736348
Target:  5'- gUGUCGAUCUGCGggaaGCGCAGcgacggCGAc -3'
miRNA:   3'- aGCGGCUAGACGCg---CGUGUCaa----GUUu -5'
26036 5' -53.9 NC_005342.2 + 30941 0.66 0.736348
Target:  5'- aUGCCGGUCgcgacgGC-CGCGCGGcgCAGc -3'
miRNA:   3'- aGCGGCUAGa-----CGcGCGUGUCaaGUUu -5'
26036 5' -53.9 NC_005342.2 + 29936 0.66 0.714371
Target:  5'- cCGCCGAUCgaucgacGCGCcGCGCGcgaucagcgcGUUCAu- -3'
miRNA:   3'- aGCGGCUAGa------CGCG-CGUGU----------CAAGUuu -5'
26036 5' -53.9 NC_005342.2 + 9345 0.66 0.714371
Target:  5'- gUGCCGAUCaGCGCGaaGCGGcgCGGGu -3'
miRNA:   3'- aGCGGCUAGaCGCGCg-UGUCaaGUUU- -5'
26036 5' -53.9 NC_005342.2 + 40891 0.66 0.703245
Target:  5'- cUGCCGGUCUGgauaugGCGCACA--UCGAu -3'
miRNA:   3'- aGCGGCUAGACg-----CGCGUGUcaAGUUu -5'
26036 5' -53.9 NC_005342.2 + 29261 0.66 0.703245
Target:  5'- cCGCaCGAg--GCGgGCGuCGGUUCAGAa -3'
miRNA:   3'- aGCG-GCUagaCGCgCGU-GUCAAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 47366 0.66 0.703245
Target:  5'- gUCGCCGAgaUGgGCGgCAC-GUUCGAu -3'
miRNA:   3'- -AGCGGCUagACgCGC-GUGuCAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 26821 0.66 0.692045
Target:  5'- aCGUCaagUUGCGCGCGCucGUUCAGGg -3'
miRNA:   3'- aGCGGcuaGACGCGCGUGu-CAAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 7247 0.66 0.680784
Target:  5'- aCGCCGAucaUCUGCGCG-ACGG--CGAAc -3'
miRNA:   3'- aGCGGCU---AGACGCGCgUGUCaaGUUU- -5'
26036 5' -53.9 NC_005342.2 + 23587 0.66 0.679655
Target:  5'- cCGCCGAgcaUCauccaccaagcgaUGCGCGCGaccuGGUUCAAc -3'
miRNA:   3'- aGCGGCU---AG-------------ACGCGCGUg---UCAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 20749 0.67 0.658123
Target:  5'- aUCGCCGAcgcggCUGCGCGC-CuGaacgUCGAc -3'
miRNA:   3'- -AGCGGCUa----GACGCGCGuGuCa---AGUUu -5'
26036 5' -53.9 NC_005342.2 + 7014 0.67 0.658123
Target:  5'- -gGUCGGUuugaaCUGUGCGCGCAGaUCGGc -3'
miRNA:   3'- agCGGCUA-----GACGCGCGUGUCaAGUUu -5'
26036 5' -53.9 NC_005342.2 + 28701 0.67 0.635359
Target:  5'- gUCGCCGGa-UGCGUGCAU-GUUCGu- -3'
miRNA:   3'- -AGCGGCUagACGCGCGUGuCAAGUuu -5'
26036 5' -53.9 NC_005342.2 + 21631 0.67 0.635359
Target:  5'- uUCGauCCGGaaggcaugCUGCGCGCGCAGaUCGGc -3'
miRNA:   3'- -AGC--GGCUa-------GACGCGCGUGUCaAGUUu -5'
26036 5' -53.9 NC_005342.2 + 23258 0.67 0.623967
Target:  5'- aCGCUG-UC-GCGCGCGCGGaUCGGc -3'
miRNA:   3'- aGCGGCuAGaCGCGCGUGUCaAGUUu -5'
26036 5' -53.9 NC_005342.2 + 14282 0.67 0.623967
Target:  5'- aUGUCGAUCaGCGCGgCGCcGUUCGc- -3'
miRNA:   3'- aGCGGCUAGaCGCGC-GUGuCAAGUuu -5'
26036 5' -53.9 NC_005342.2 + 45827 0.67 0.622828
Target:  5'- -gGCCGAgcgCgGUGCGCGCuacggcaAGUUCGAGg -3'
miRNA:   3'- agCGGCUa--GaCGCGCGUG-------UCAAGUUU- -5'
26036 5' -53.9 NC_005342.2 + 44652 0.68 0.617135
Target:  5'- gCGCCGAagaagucggcagcuaUcCUGCGCGCGCAcgUCGGc -3'
miRNA:   3'- aGCGGCU---------------A-GACGCGCGUGUcaAGUUu -5'
26036 5' -53.9 NC_005342.2 + 19249 0.68 0.578578
Target:  5'- aCGCCGAUCcgGCGgcCGCGCAgcugauugccgcGUUCGAc -3'
miRNA:   3'- aGCGGCUAGa-CGC--GCGUGU------------CAAGUUu -5'
26036 5' -53.9 NC_005342.2 + 17113 0.69 0.55613
Target:  5'- uUCGCCGggCUcGCGCGCgagcaGCAGcUCGc- -3'
miRNA:   3'- -AGCGGCuaGA-CGCGCG-----UGUCaAGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.