miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26253 3' -52.1 NC_005345.2 + 24127 0.66 0.872219
Target:  5'- cCGCggUgaCCgaGGCGCagaccgauaacACAUGGAUCCc -3'
miRNA:   3'- cGUGuuGaaGG--CCGCG-----------UGUACCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 6876 0.66 0.864014
Target:  5'- cGC-CGAUg-CCGcuGCGCAUGUGGAUCg -3'
miRNA:   3'- -CGuGUUGaaGGC--CGCGUGUACCUAGg -5'
26253 3' -52.1 NC_005345.2 + 1184 0.66 0.861503
Target:  5'- cGCACAcgggcgGCUcggcagUCCGGCccgcgggccacgccGCGCGguacGGGUCCc -3'
miRNA:   3'- -CGUGU------UGA------AGGCCG--------------CGUGUa---CCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 37032 0.66 0.855555
Target:  5'- -aGCGGCacCgGGCGaGCcgGGAUCCg -3'
miRNA:   3'- cgUGUUGaaGgCCGCgUGuaCCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 38564 0.66 0.855555
Target:  5'- cGCGCccaccGGCa--CGGCGUACGUGGcgCUc -3'
miRNA:   3'- -CGUG-----UUGaagGCCGCGUGUACCuaGG- -5'
26253 3' -52.1 NC_005345.2 + 45528 0.66 0.855555
Target:  5'- gGCACAcCUg-CGGCGCGggcCGUGGggUCa -3'
miRNA:   3'- -CGUGUuGAagGCCGCGU---GUACCuaGG- -5'
26253 3' -52.1 NC_005345.2 + 42786 0.66 0.846849
Target:  5'- gGC-CGACUguagCCGGUGCGgAUGcGG-CCa -3'
miRNA:   3'- -CGuGUUGAa---GGCCGCGUgUAC-CUaGG- -5'
26253 3' -52.1 NC_005345.2 + 11164 0.66 0.846849
Target:  5'- uGUACGGCggcaccCCGGCGCA----GGUCCg -3'
miRNA:   3'- -CGUGUUGaa----GGCCGCGUguacCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 22302 0.66 0.846849
Target:  5'- gGCACGuugcccGCgcUCGGCGCGCcgGGugCCg -3'
miRNA:   3'- -CGUGU------UGaaGGCCGCGUGuaCCuaGG- -5'
26253 3' -52.1 NC_005345.2 + 5075 0.66 0.846849
Target:  5'- aGCuGCAGCccaUCGGCGCuCGgcGGGUCCa -3'
miRNA:   3'- -CG-UGUUGaa-GGCCGCGuGUa-CCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 47990 0.66 0.837906
Target:  5'- cGCGCAcGCUccccUCgCGGCGCG-GUGGuGUCCc -3'
miRNA:   3'- -CGUGU-UGA----AG-GCCGCGUgUACC-UAGG- -5'
26253 3' -52.1 NC_005345.2 + 48040 0.66 0.836999
Target:  5'- aCGCGGCUgugcucgUCCGGCGCGCAccGcUCg -3'
miRNA:   3'- cGUGUUGA-------AGGCCGCGUGUacCuAGg -5'
26253 3' -52.1 NC_005345.2 + 22623 0.66 0.828735
Target:  5'- uGCGguGgUUCCGGCGCucgugccggguGCAagGGGUCg -3'
miRNA:   3'- -CGUguUgAAGGCCGCG-----------UGUa-CCUAGg -5'
26253 3' -52.1 NC_005345.2 + 30893 0.67 0.819346
Target:  5'- gGCgACGGCgcggCCGGCgagcaGCACcgGGA-CCa -3'
miRNA:   3'- -CG-UGUUGaa--GGCCG-----CGUGuaCCUaGG- -5'
26253 3' -52.1 NC_005345.2 + 42973 0.67 0.80975
Target:  5'- cGCACGAa--CCGGgcCGgGCGUGuGGUCCu -3'
miRNA:   3'- -CGUGUUgaaGGCC--GCgUGUAC-CUAGG- -5'
26253 3' -52.1 NC_005345.2 + 5207 0.67 0.80975
Target:  5'- gGCACGGCcggcCCGGCGCuACAcgccgucgGGGUgCCc -3'
miRNA:   3'- -CGUGUUGaa--GGCCGCG-UGUa-------CCUA-GG- -5'
26253 3' -52.1 NC_005345.2 + 37948 0.67 0.799957
Target:  5'- cGC-CGACggugcCCGaGCGgAUcgGGAUCCg -3'
miRNA:   3'- -CGuGUUGaa---GGC-CGCgUGuaCCUAGG- -5'
26253 3' -52.1 NC_005345.2 + 2787 0.67 0.799957
Target:  5'- gGUACGGCUUgUCGGCGCcgGCGUGcgcucGAUCg -3'
miRNA:   3'- -CGUGUUGAA-GGCCGCG--UGUAC-----CUAGg -5'
26253 3' -52.1 NC_005345.2 + 43514 0.67 0.799957
Target:  5'- uCGCGGCgaacCCGGCGCucGCGgagcGGAUCg -3'
miRNA:   3'- cGUGUUGaa--GGCCGCG--UGUa---CCUAGg -5'
26253 3' -52.1 NC_005345.2 + 40262 0.67 0.789979
Target:  5'- aCGgGGCg-CCGGCGgGCAUGaGUCCg -3'
miRNA:   3'- cGUgUUGaaGGCCGCgUGUACcUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.