miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26258 3' -51.5 NC_005345.2 + 21111 0.66 0.894625
Target:  5'- cCGCcgaaAGC---UCGAcGACGUCGAGGCCu -3'
miRNA:   3'- -GCG----UCGacuAGUUcCUGUAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 32955 0.66 0.894625
Target:  5'- aCGgAGCacggCGAGGcaGUCGAGGCCg -3'
miRNA:   3'- -GCgUCGacuaGUUCCugUAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 44573 0.66 0.890182
Target:  5'- uCGCGGC-GAUCAccgaucgacugaaagAGGACGucaUCGAGGa- -3'
miRNA:   3'- -GCGUCGaCUAGU---------------UCCUGU---AGCUCUgg -5'
26258 3' -51.5 NC_005345.2 + 4832 0.66 0.887165
Target:  5'- gGCGGCccacaggaUGAUCccgacguGuGACGUCGAGuACCa -3'
miRNA:   3'- gCGUCG--------ACUAGuu-----C-CUGUAGCUC-UGG- -5'
26258 3' -51.5 NC_005345.2 + 30314 0.66 0.887165
Target:  5'- gGCGGCguacgcaacGGUCGAGGACuaccAGGCCc -3'
miRNA:   3'- gCGUCGa--------CUAGUUCCUGuagcUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 28941 0.66 0.886404
Target:  5'- gCGCGGCgGGUCuauGGGGACA-CGcacgacaAGGCCc -3'
miRNA:   3'- -GCGUCGaCUAG---UUCCUGUaGC-------UCUGG- -5'
26258 3' -51.5 NC_005345.2 + 7187 0.66 0.882555
Target:  5'- uGCGGCaGAUCGcGGACgacaucgcgaaggguGUCGAcacggcGACCg -3'
miRNA:   3'- gCGUCGaCUAGUuCCUG---------------UAGCU------CUGG- -5'
26258 3' -51.5 NC_005345.2 + 37643 0.66 0.879427
Target:  5'- aGCGGCUGcaGUCc--GGCGUCGgugcGGGCCg -3'
miRNA:   3'- gCGUCGAC--UAGuucCUGUAGC----UCUGG- -5'
26258 3' -51.5 NC_005345.2 + 28945 0.66 0.879427
Target:  5'- aCGCAGCUGA-CGGGccuuauCcgCGAGGCg -3'
miRNA:   3'- -GCGUCGACUaGUUCcu----GuaGCUCUGg -5'
26258 3' -51.5 NC_005345.2 + 25872 0.66 0.879427
Target:  5'- uCGCcGCUGAUCAcgauGGAgCAcccgagCGAGugCa -3'
miRNA:   3'- -GCGuCGACUAGUu---CCU-GUa-----GCUCugG- -5'
26258 3' -51.5 NC_005345.2 + 29934 0.66 0.879427
Target:  5'- aGCAGggGAggacCGGcucGACGUCGGGGCCg -3'
miRNA:   3'- gCGUCgaCUa---GUUc--CUGUAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 3270 0.66 0.879427
Target:  5'- uGCAGaccgUGAUCGAcGGCGUCGGGcuCCc -3'
miRNA:   3'- gCGUCg---ACUAGUUcCUGUAGCUCu-GG- -5'
26258 3' -51.5 NC_005345.2 + 40240 0.66 0.871419
Target:  5'- gGCAGUuccgGAUCGAGacgaucgacggcGACGUCGAcGACg -3'
miRNA:   3'- gCGUCGa---CUAGUUC------------CUGUAGCU-CUGg -5'
26258 3' -51.5 NC_005345.2 + 43917 0.66 0.871419
Target:  5'- gCGCAGCgcgucggcGAUCAGGccGGCcgCGAGcuGCCc -3'
miRNA:   3'- -GCGUCGa-------CUAGUUC--CUGuaGCUC--UGG- -5'
26258 3' -51.5 NC_005345.2 + 6969 0.66 0.863146
Target:  5'- uCGCuucGCUGcggCAGGGcuuUCGGGGCCg -3'
miRNA:   3'- -GCGu--CGACua-GUUCCuguAGCUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 24756 0.66 0.863146
Target:  5'- gCGUGGCUGucgCAGcccgaagugcGGGCGUCGuccGACCu -3'
miRNA:   3'- -GCGUCGACua-GUU----------CCUGUAGCu--CUGG- -5'
26258 3' -51.5 NC_005345.2 + 30126 0.66 0.863146
Target:  5'- cCGaCGGCUcGggCGGcGACGUCGAGGCg -3'
miRNA:   3'- -GC-GUCGA-CuaGUUcCUGUAGCUCUGg -5'
26258 3' -51.5 NC_005345.2 + 47843 0.66 0.863146
Target:  5'- aGCGGCUGcuauGUCAGguGGGCAU--GGGCCc -3'
miRNA:   3'- gCGUCGAC----UAGUU--CCUGUAgcUCUGG- -5'
26258 3' -51.5 NC_005345.2 + 42591 0.66 0.863146
Target:  5'- gGCGGCagGAUCGAGuACAgcucgCGAG-CCu -3'
miRNA:   3'- gCGUCGa-CUAGUUCcUGUa----GCUCuGG- -5'
26258 3' -51.5 NC_005345.2 + 28407 0.66 0.858913
Target:  5'- gGCAGCggcaggcagggcgGAUCGgucgccgAGGGCcgCGAGAUg -3'
miRNA:   3'- gCGUCGa------------CUAGU-------UCCUGuaGCUCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.