miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26260 3' -54.5 NC_005345.2 + 27093 0.66 0.735996
Target:  5'- -gUGCCGGAcccacCGCGGUcgGCUCGUGAg -3'
miRNA:   3'- ugGCGGCUU-----GCGUCAagCGAGUACUg -5'
26260 3' -54.5 NC_005345.2 + 13178 0.66 0.733851
Target:  5'- uGCgGCCGGGgucCGaCAGgaagucaacccCGCUCAUGACg -3'
miRNA:   3'- -UGgCGGCUU---GC-GUCaa---------GCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 26719 0.66 0.72523
Target:  5'- gUCGCCGAACGUc---CGCccCGUGACa -3'
miRNA:   3'- uGGCGGCUUGCGucaaGCGa-GUACUG- -5'
26260 3' -54.5 NC_005345.2 + 30402 0.66 0.72523
Target:  5'- uACC-UCGAcgACGCGuccgCGCUCAUGGCg -3'
miRNA:   3'- -UGGcGGCU--UGCGUcaa-GCGAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 36366 0.66 0.72523
Target:  5'- uUCGCCGcguACGCGGgcgCGCUCcgcGGCc -3'
miRNA:   3'- uGGCGGCu--UGCGUCaa-GCGAGua-CUG- -5'
26260 3' -54.5 NC_005345.2 + 9683 0.66 0.72523
Target:  5'- cGCCGCCGGcUGCAGgcCGaUCAgcgGGCc -3'
miRNA:   3'- -UGGCGGCUuGCGUCaaGCgAGUa--CUG- -5'
26260 3' -54.5 NC_005345.2 + 6127 0.66 0.720897
Target:  5'- gGCCGCCGAcgACGCAGUacgggaagaacagCGCUUcgaucugcagGACc -3'
miRNA:   3'- -UGGCGGCU--UGCGUCAa------------GCGAGua--------CUG- -5'
26260 3' -54.5 NC_005345.2 + 47107 0.66 0.714368
Target:  5'- cCCGCCGGgccGCGcCGGgccCGCUCGacgagGACg -3'
miRNA:   3'- uGGCGGCU---UGC-GUCaa-GCGAGUa----CUG- -5'
26260 3' -54.5 NC_005345.2 + 43982 0.66 0.714368
Target:  5'- aGCCuUCGAGgGCGGcgacgagUCGCUCGUGcACg -3'
miRNA:   3'- -UGGcGGCUUgCGUCa------AGCGAGUAC-UG- -5'
26260 3' -54.5 NC_005345.2 + 41570 0.66 0.714368
Target:  5'- cGCuCGCCGugcuCGCGGgcgugcUCGgUCGUGAUg -3'
miRNA:   3'- -UG-GCGGCuu--GCGUCa-----AGCgAGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 26360 0.66 0.714368
Target:  5'- cCCGCCGAggaucGCGCGGaUCcCUCccgagGUGACc -3'
miRNA:   3'- uGGCGGCU-----UGCGUCaAGcGAG-----UACUG- -5'
26260 3' -54.5 NC_005345.2 + 48276 0.66 0.714368
Target:  5'- uGCCGcCCGAccgcGCGCAGUgcgCGCUgAUc-- -3'
miRNA:   3'- -UGGC-GGCU----UGCGUCAa--GCGAgUAcug -5'
26260 3' -54.5 NC_005345.2 + 46308 0.66 0.703423
Target:  5'- cGCCGcCCGAGCGCAcgcugUCGgcCUCGcGGCg -3'
miRNA:   3'- -UGGC-GGCUUGCGUca---AGC--GAGUaCUG- -5'
26260 3' -54.5 NC_005345.2 + 34207 0.66 0.703423
Target:  5'- cGCCGUCaccaugGGGCaGCAGUUCGCcCggGGCg -3'
miRNA:   3'- -UGGCGG------CUUG-CGUCAAGCGaGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 30168 0.66 0.702324
Target:  5'- cCCGCCGGccagcggcgacccAUGCGGcgagCGCUUcgGACc -3'
miRNA:   3'- uGGCGGCU-------------UGCGUCaa--GCGAGuaCUG- -5'
26260 3' -54.5 NC_005345.2 + 29633 0.66 0.692405
Target:  5'- uGCCGCCGAucgagguguacgACGCGaaggUCGC-CGUcGACg -3'
miRNA:   3'- -UGGCGGCU------------UGCGUca--AGCGaGUA-CUG- -5'
26260 3' -54.5 NC_005345.2 + 736 0.66 0.692405
Target:  5'- cGCCGUCGAcgugccgcuCGCGGU--GCUCGUGGg -3'
miRNA:   3'- -UGGCGGCUu--------GCGUCAagCGAGUACUg -5'
26260 3' -54.5 NC_005345.2 + 22036 0.66 0.681327
Target:  5'- uGCCGCCGuGGCGCcgAGcaugUCGgC-CAUGACg -3'
miRNA:   3'- -UGGCGGC-UUGCG--UCa---AGC-GaGUACUG- -5'
26260 3' -54.5 NC_005345.2 + 45030 0.66 0.681327
Target:  5'- aGCCGCuCGAACGCcaacCGCUCggGGg -3'
miRNA:   3'- -UGGCG-GCUUGCGucaaGCGAGuaCUg -5'
26260 3' -54.5 NC_005345.2 + 18932 0.66 0.681327
Target:  5'- cACCGCCGGAUGCGcGaUCGUcgCccGGCa -3'
miRNA:   3'- -UGGCGGCUUGCGU-CaAGCGa-GuaCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.